Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G62860 398 / 7e-140 alpha/beta-Hydrolases superfamily protein (.1) AT2G47630 387 / 3e-135 alpha/beta-Hydrolases superfamily protein (.1) AT3G55180 273 / 3e-91 alpha/beta-Hydrolases superfamily protein (.1) AT2G39410 273 / 8e-91 alpha/beta-Hydrolases superfamily protein (.1.2) AT2G39420 271 / 3e-90 alpha/beta-Hydrolases superfamily protein (.1) AT2G39400 269 / 2e-89 alpha/beta-Hydrolases superfamily protein (.1) AT3G55190 230 / 3e-74 alpha/beta-Hydrolases superfamily protein (.1) AT5G16120 230 / 1e-73 alpha/beta-Hydrolases superfamily protein (.1.2) AT1G11090 221 / 1e-70 alpha/beta-Hydrolases superfamily protein (.1) AT1G77420 207 / 1e-64 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007877 [exp] 571 / 0 AT3G62860 501 / 2e-179 alpha/beta-Hydrolases superfamily protein (.1) Lus10040328 [exp] 278 / 1e-92 AT2G39420 468 / 2e-167 alpha/beta-Hydrolases superfamily protein (.1) Lus10023448 [exp] 276 / 3e-88 AT2G39420 459 / 2e-159 alpha/beta-Hydrolases superfamily protein (.1) Lus10017601 [exp] 233 / 6e-75 AT5G16120 514 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10009169 [exp] 223 / 7e-71 AT5G16120 490 / 2e-175 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10017600 [exp] 214 / 4e-68 AT5G16120 409 / 5e-144 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10033561 [exp] 217 / 6e-68 AT5G16120 441 / 6e-155 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10018466 [exp] 209 / 7e-67 AT1G11090 382 / 1e-134 alpha/beta-Hydrolases superfamily protein (.1) Lus10034331 [exp] 213 / 2e-66 AT1G77420 499 / 8e-178 alpha/beta-Hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G129000 [exp] 431 / 1e-152 AT3G62860 499 / 5e-179 alpha/beta-Hydrolases superfamily protein (.1) Potri.002G204200 [exp] 411 / 6e-145 AT2G47630 493 / 2e-176 alpha/beta-Hydrolases superfamily protein (.1) Potri.010G212200 [exp] 268 / 8e-89 AT2G39420 462 / 4e-165 alpha/beta-Hydrolases superfamily protein (.1) Potri.008G049000 [exp] 258 / 3e-85 AT2G39420 479 / 8e-172 alpha/beta-Hydrolases superfamily protein (.1) Potri.017G114800 [exp] 233 / 3e-74 AT5G16120 520 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.011G046500 [exp] 213 / 2e-67 AT1G11090 461 / 1e-164 alpha/beta-Hydrolases superfamily protein (.1) Potri.010G124000 [exp] 191 / 4e-58 AT1G77420 510 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.003G059200 [exp] 167 / 2e-49 AT1G52760 560 / 0.0 lysophospholipase 2 (.1) Potri.001G466700 [exp] 161 / 3e-47 AT5G14980 346 / 6e-119 alpha/beta-Hydrolases superfamily protein (.1) Potri.010G222300 [exp] 161 / 4e-47 AT5G19290 472 / 8e-169 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10030366 pacid=23153116 polypeptide=Lus10030366 locus=Lus10030366.g ID=Lus10030366.BGIv1.0 annot-version=v1.0 ATGGATTACGAAGGACACGGTCGATCGAGTGGGTCGAGATGCTATATTAAGAAGTTCGAGAACATCATCAACGACTGCGACGAGTTCTTCAGGTCGGTGG CGGCAGAGAAAGAGCTGAGGGAGAAAGGAAGGTTCCTTTACGGTGAATCCATGGGAGGCGCCGTCTCATTGCTATTGCACAAGAAACGCCCTTCCTTCTA CAACGGCGCCGTTCTTGTTGCACCTATGTGTAAGATATCAGAGAAGTTGAAGCCACATCCGGTGGTGGTCAACATATTGACCGGTTTCGAAGAGCTCATC CCAAAGTGGAAGATCGTCCCAACTCGAGACGTGATCGATGCATCCTTCAAAGACCCCGTCAAACGAGAAGAGATAAGGAACAACAAACTTATATACCAAG ACAAGCCACGCCTGAAAACTGCACTAGAGATGCTCCGTACGAGCATGAAGCTAGAGGAGACTCTCCACCAAGTCACAGTCCCATTCCTAGTCCTCCACGG AGACGCCGACACGGTCACGGATCCCGAGATAAGCAAGGCGCTTTACGAGCAGGCCGGGAGCAAGGACAAGACCATCAAGCTGTACCCTGGAATGTGGCAC GGTCTGACATCGGGTGAGACTGACGACAATGTACAGATCGTGTTCTCCGATGTCGTTTCATGGTTGGACCGACATAGTGGGGTGGCAAGCGGGATTGTTG TCGAACCGATCGGTGGTGAGGATGATCGGATGGTGGTGGCGGCTGTAGCTAGTAGTGATGGTGGTGGTGTGGTACGGAAGAAGGGGTTAAGTTGGACGAG ATCAGGTGGTGATAAGAGACAGACGGGAAAAACGACGTCGTATGGAAGTGGTGGGAGTTATCTTTGTGGGTTTAAGGAGCCTAGGACTCTGCATTCTGCC ATGTAG
AA sequence Show only first row Show all	>Lus10030366 pacid=23153116 polypeptide=Lus10030366 locus=Lus10030366.g ID=Lus10030366.BGIv1.0 annot-version=v1.0 MDYEGHGRSSGSRCYIKKFENIINDCDEFFRSVAAEKELREKGRFLYGESMGGAVSLLLHKKRPSFYNGAVLVAPMCKISEKLKPHPVVVNILTGFEELI PKWKIVPTRDVIDASFKDPVKREEIRNNKLIYQDKPRLKTALEMLRTSMKLEETLHQVTVPFLVLHGDADTVTDPEISKALYEQAGSKDKTIKLYPGMWH GLTSGETDDNVQIVFSDVVSWLDRHSGVASGIVVEPIGGEDDRMVVAAVASSDGGGVVRKKGLSWTRSGGDKRQTGKTTSYGSGGSYLCGFKEPRTLHSA M

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G62860			alpha/beta-Hydrolases superfam...		Lus10030366 [exp]	0	1
AT4G05120		FUR1, ENT3, FLU...	FUDR RESISTANT 1, EQUILIBRATIV...		Lus10018413 [exp]	3.3	0.7698
AT3G20430			unknown protein		Lus10007452 [exp]	5.5	0.7178
AT5G40460			unknown protein		Lus10002514 [exp]	6.6	0.7553
AT1G15320			unknown protein		Lus10025746 [exp]	10.5	0.7565
AT1G72570	AP2_ERF		Integrase-type DNA-binding sup...		Lus10037670 [exp]	19.0	0.7506
AT4G34460		ELK4, AGB1, ATA...	ERECTA-LIKE 4, GTP binding pro...		Lus10040464 [exp]	31.1	0.7139
AT5G58170		GDPDL7, SVL5	Glycerophosphodiester phosphod...		Lus10019605 [exp]	36.9	0.7059
AT1G11340			S-locus lectin protein kinase ...		Lus10018402 [exp]	40.2	0.7025
AT3G06270			Protein phosphatase 2C family ...		Lus10012768 [exp]	48.6	0.7293
AT4G22360			SWIB complex BAF60b domain-con...		Lus10016581 [exp]	76.1	0.6969

Compare expression of checked genes

Lus10030366 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.