Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G62830 723 / 0 ATUXS2, UXS2, AUD1 UDP-GLUCURONIC ACID DECARBOXYLASE 2, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT2G47650 713 / 0 UXS4 UDP-xylose synthase 4 (.1.2) AT3G53520 605 / 0 ATUXS1, UXS1 UDP-glucuronic acid decarboxylase 1 (.1.2.3.4) AT2G28760 482 / 1e-170 UXS6 UDP-XYL synthase 6 (.1.2.3) AT3G46440 481 / 3e-170 UXS5 UDP-XYL synthase 5 (.1.2) AT5G59290 478 / 1e-168 ATUXS3, UXS3 UDP-glucuronic acid decarboxylase 3 (.1.2) AT1G08200 118 / 2e-29 AXS2 UDP-D-apiose/UDP-D-xylose synthase 2 (.1) AT2G27860 118 / 3e-29 AXS1 UDP-D-apiose/UDP-D-xylose synthase 1 (.1) AT5G28840 117 / 5e-29 GME "GDP-D-mannose 3',5'-epimerase", GDP-D-mannose 3',5'-epimerase (.1.2) AT1G53500 108 / 4e-25 ATRHM2, ATMUM4, RHM2, MUM4 ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 2, ARABIDOPSIS THALIANA MUCILAGE-MODIFIED 4, NAD-dependent epimerase/dehydratase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003605 [exp] 719 / 0 AT2G47650 693 / 0.0 UDP-xylose synthase 4 (.1.2) Lus10006510 [exp] 623 / 0 AT3G62830 637 / 0.0 UDP-GLUCURONIC ACID DECARBOXYLASE 2, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10024436 [exp] 600 / 0 AT3G53520 736 / 0.0 UDP-glucuronic acid decarboxylase 1 (.1.2.3.4) Lus10015038 [exp] 590 / 0 AT3G53520 720 / 0.0 UDP-glucuronic acid decarboxylase 1 (.1.2.3.4) Lus10025293 [exp] 581 / 0 AT3G53520 715 / 0.0 UDP-glucuronic acid decarboxylase 1 (.1.2.3.4) Lus10037499 [exp] 540 / 0 AT3G62830 551 / 0.0 UDP-GLUCURONIC ACID DECARBOXYLASE 2, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10005450 [exp] 486 / 4e-172 AT3G46440 635 / 0.0 UDP-XYL synthase 5 (.1.2) Lus10005155 [exp] 486 / 4e-172 AT2G28760 639 / 0.0 UDP-XYL synthase 6 (.1.2.3) Lus10007874 [exp] 484 / 4e-172 AT3G62830 365 / 1e-125 UDP-GLUCURONIC ACID DECARBOXYLASE 2, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G204400 [exp] 738 / 0 AT3G62830 723 / 0.0 UDP-GLUCURONIC ACID DECARBOXYLASE 2, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.014G129200 [exp] 732 / 0 AT3G62830 720 / 0.0 UDP-GLUCURONIC ACID DECARBOXYLASE 2, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.016G080500 [exp] 625 / 0 AT3G53520 736 / 0.0 UDP-glucuronic acid decarboxylase 1 (.1.2.3.4) Potri.006G214000 [exp] 603 / 0 AT3G53520 709 / 0.0 UDP-glucuronic acid decarboxylase 1 (.1.2.3.4) Potri.010G207200 [exp] 488 / 5e-173 AT2G28760 625 / 0.0 UDP-XYL synthase 6 (.1.2.3) Potri.008G053100 [exp] 486 / 4e-172 AT2G28760 623 / 0.0 UDP-XYL synthase 6 (.1.2.3) Potri.001G237200 [exp] 482 / 1e-170 AT3G46440 637 / 0.0 UDP-XYL synthase 5 (.1.2) Potri.005G053000 [exp] 118 / 2e-29 AT5G28840 720 / 0.0 "GDP-D-mannose 3',5'-epimerase", GDP-D-mannose 3',5'-epimerase (.1.2) Potri.004G189900 [exp] 117 / 4e-29 AT1G08200 717 / 0.0 UDP-D-apiose/UDP-D-xylose synthase 2 (.1) Potri.013G040600 [exp] 115 / 2e-28 AT5G28840 723 / 0.0 "GDP-D-mannose 3',5'-epimerase", GDP-D-mannose 3',5'-epimerase (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF01370 [flax] [poplar] Epimerase NAD dependent epimerase/dehydratase family
Representative CDS sequence Show only first row Show all	>Lus10030368 pacid=23153152 polypeptide=Lus10030368 locus=Lus10030368.g ID=Lus10030368.BGIv1.0 annot-version=v1.0 ATGGCGTCGGAGCTAATATTCAGAGGCCAAAACGAAGCCCATCCCACCGCCGACACTTACTCCCCAAAGCCGCTGAAGCCCTGGCTATCAATATCCCGTC CGATTCGGTACCTCCTCCGGGAGCAGCGCCTCCTCTGCGTCCTCGCTGGCATTGCAATCGCTACCCTCCTCTTCACCGTCGGCGGCAACCGAACTCCTCA GCAGCAGCTCAGCAGCTACCGTCACGACGAGCCGATGACATTCGGCAACGGTGGAAACGGCAGAAAAGAATCCCTACTGACGCACCCGGCGACGGCGATT AGGTCGTCTTCGGCGGGAGGCAAGATCCCGCTGGGATTAAAGAGCAAAGGTCTGAGGATCGTGGTCACCGGAGGGGCCGGATTCGTGGGTTCGCATCTGG TGGACAGGCTGATCGAGAGAGGGGACAGCGTAATCGTGGTGGACAATTTCTTCACGGGGAGGAAAGAGAACGTGATGCACCATTTCAAGAACCCTAGGTT CGAGATGATCCGACACGACGTCGTTGAGCCGCTGCTGCTGGAAGTTGACCAGATCTACCACTTGGCCTGCCCGGCTTCGCCGGTCCACTACAAGTATAAC CCGGTCAAGACCATCAAGACCAACGTGGTGGGGACGCTGAACATGCTCGGGCTGGCCAAGCGAGTCGGAGCCCGGTTCCTGCTCACCAGTACCAGCGAGG TCTACGGCGACCCGCTTCAGCACCCGCAAGTCGAGACCTACTGGGGCAACGTTAACCCGATCGGTGTAAGAAGCTGTTACGACGAAGGAAAAAGGACAGC AGAGACACTGACAATGGACTATCACAGAGGAGCAGGTGTGGAGGTTAGAATTGCCAGAATCTTCAACACTTATGGACCTAGGATGTGCATCGACGATGGT CGCGTCGTCAGTAACTTCGTCGCTCAGGCTTTGAGGAAGGAGCCATTGACGGTGTATGGAGACGGGAAGCAGACCAGGAGTTTTCAATTCGTCTCTGACT TGGTTGAGGGACTGATGCGTCTGATGGAAGGAGAGCACGTCGGGCCATTCAACCTCGGCAACCCGGGGGAGTTCACCATGCTCGAGCTCGCTCAGGTGGT CCAGGAAACCATCGATGCCAATGCCAAGATCGAGTTCAGGCCCAACACGGAGGACGACCCGCACAAGAGGAAGCCTGACATCACAAAGGCCAAAGAACTT CTGGGTTGGGAGCCTAAGGTCTCCCTCCGCAAAGGTCTCCCTCTCATGGTCTCCGATTTCCGGCAGCGAGTCTTCGGAGACCATAATGAAGGCAGCGGCA GCATCAGCGATGCTGCTTCGACATCTTGA
AA sequence Show only first row Show all	>Lus10030368 pacid=23153152 polypeptide=Lus10030368 locus=Lus10030368.g ID=Lus10030368.BGIv1.0 annot-version=v1.0 MASELIFRGQNEAHPTADTYSPKPLKPWLSISRPIRYLLREQRLLCVLAGIAIATLLFTVGGNRTPQQQLSSYRHDEPMTFGNGGNGRKESLLTHPATAI RSSSAGGKIPLGLKSKGLRIVVTGGAGFVGSHLVDRLIERGDSVIVVDNFFTGRKENVMHHFKNPRFEMIRHDVVEPLLLEVDQIYHLACPASPVHYKYN PVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGDPLQHPQVETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCIDDG RVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEHVGPFNLGNPGEFTMLELAQVVQETIDANAKIEFRPNTEDDPHKRKPDITKAKEL LGWEPKVSLRKGLPLMVSDFRQRVFGDHNEGSGSISDAASTS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G62830		ATUXS2, UXS2, A...	UDP-GLUCURONIC ACID DECARBOXYL...		Lus10030368 [exp]	0	1
AT3G19540			Protein of unknown function (D...		Lus10013891 [exp]	1.7	0.8101
AT5G14760		AO	L-aspartate oxidase (.1)		Lus10014539 [exp]	2.0	0.8170
AT3G26744	bHLH	SCRM, ATICE1, I...	SCREAM, A. THALIANA INDUCER OF...		Lus10043199 [exp]	3.7	0.8109
AT5G24650			Mitochondrial import inner mem...		Lus10015593 [exp]	5.5	0.7899
AT1G59960			NAD(P)-linked oxidoreductase s...		Lus10010720 [exp]	8.1	0.7695
AT5G49910		CPHSC70-2EATSHO...	HEAT SHOCK PROTEIN 70-7, chlor...		Lus10039044 [exp]	11.1	0.8078
AT2G19130			S-locus lectin protein kinase ...		Lus10033748 [exp]	12.4	0.6641
AT5G64300		ATGCH, ATRIBA1,...	RED FLUORESCENT IN DARKNESS 1,...		Lus10012751 [exp]	14.9	0.6529
AT1G28530			unknown protein		Lus10015294 [exp]	16.0	0.7731
AT4G30950		FADC, SFD4, FAD...	STEAROYL DESATURASE DEFICIENCY...		Lus10035831 [exp]	17.7	0.7640

Compare expression of checked genes

Lus10030368 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.