Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02425 128 / 8e-34 unknown protein AT3G62820 105 / 3e-26 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT2G47670 80 / 4e-17 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT5G20740 77 / 4e-16 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT5G62360 67 / 9e-13 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT1G23205 67 / 9e-13 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT1G70720 65 / 7e-12 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT1G62760 65 / 2e-11 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT2G01610 63 / 5e-11 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT5G62350 62 / 7e-11 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007873 [exp] 192 / 1e-58 AT3G62820 166 / 4e-52 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Lus10031138 [exp] 77 / 8e-16 AT5G62360 172 / 3e-54 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Lus10027199 [exp] 72 / 3e-14 AT5G62360 169 / 3e-53 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Lus10031711 [exp] 71 / 4e-14 AT5G62360 145 / 4e-44 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Lus10038915 [exp] 71 / 9e-14 AT5G62360 174 / 5e-55 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Lus10037919 [exp] 67 / 1e-12 AT1G14890 137 / 3e-47 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Lus10038645 [exp] 67 / 2e-12 AT2G01610 212 / 2e-69 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Lus10027198 [exp] 66 / 2e-12 AT5G62350 191 / 3e-62 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Lus10031713 [exp] 66 / 3e-12 AT5G62350 202 / 4e-66 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G129500 [exp] 166 / 7e-48 AT4G02425 189 / 5e-59 unknown protein Potri.002G204700 [exp] 153 / 3e-43 AT4G02425 153 / 2e-45 unknown protein Potri.014G129400 [exp] 135 / 4e-37 AT3G62820 163 / 6e-51 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.006G137800 [exp] 84 / 2e-18 AT5G20740 205 / 2e-67 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.015G128100 [exp] 76 / 1e-15 AT5G62360 221 / 1e-73 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.008G132600 [exp] 76 / 2e-15 AT1G14890 216 / 1e-71 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.010G109300 [exp] 74 / 4e-15 AT1G14890 218 / 5e-72 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.003G113600 [exp] 74 / 4e-15 AT1G62760 171 / 1e-52 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.001G119300 [exp] 74 / 8e-15 AT1G62760 167 / 3e-51 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.015G128300 [exp] 67 / 1e-12 AT5G62360 192 / 1e-62 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04043 [flax] [poplar] PMEI Plant invertase/pectin methylesterase inhibitor
Representative CDS sequence Show only first row Show all	>Lus10030370 pacid=23153205 polypeptide=Lus10030370 locus=Lus10030370.g ID=Lus10030370.BGIv1.0 annot-version=v1.0 ATGCGGGACCCAGTTAGCTACTGGCTCTACATGGAGGAGTATCTCTATGACGAATTTAGACCACTACTCCTCTTTCTCTCTCAGCTGAGTTGTCTTTCTC ATTCACTGCTTTCTCACCCAACGGTGTTTGTTCCCTTCCCCGAAAATCAAAACCTCTATTTCTCCGGCGGGTATATGGCGCCACCGCCGCCGCACAAGGG TTTGCCAGATCCCCGCACCAGCTCAATAGATTCTTGTGCCTTCCATCTCCACTCATGGCGTCCTTTCAATAATCTTTCCCCACCCAAGGGTTCTTCCGAT CCCTCCTCCAGACTTTCTACCTACACCCTCGCCAAGAAACCTTGCCGCTCCGATCGGGCCACTTCCTTCCCGATCGACTCGATCGACATATCCCGCCTCT CCCTCATCGACGACGACGGGAAGTCCATCCCTCATCCTCCCTCCTCCGCCGCCGTCAGCCCTTACCGTCGCGGTCCCCTCGGTATCCTCGCCCGCAAGCG TCCCCGTCGCCGCGGCGCCTCTCGCTCTGTCTCCGGTCGTAGCTCCGACCGCAGCGCCAATCGCCGGTGTTGCTCCGTCGGCGCGTCCGCCGCCCACGGA ACCTGTTCTGATTTCCCTGTCGCGATCGGGACCGACTCCAGCGGTGAGCTCTTCGTTAACGGAGGGGATCCGAACTGGGCGTCAGATGTCAGCGAGGCCA GGAACTCGTCCAAGGAAGAGAAGGACTGTTTGTTGGTCTCCCATCCCCACGGTGGAGGCCAGTTTGGGAATTTGGAAGCTCAGGTTGCCGATTCAGGATA CGGAAGTGAACCTGGGTATAGAGGAGATGCTGAGTTTGGTTATGAGTTGCTGTGTTTGGTTATGGCGATGAGTTTGACGAAGAGGAAGAAGATCCCAGGC CACTGTTTTGGGATGAGGATACAGATACTAAGATGGAGATGGTTGGAGAGAACACATTGTTCACTGATCAGAAGACTCATTACAGATGCCGTCGAAAGAA ACACGATTGCCGCATGGTCGAGTCTCTTAGATGACTTCAACAAATTTTTGGTGTCAAGCTCCCCTCATTATAGAAAAGGTAGCAGGAACCGGGCGGCTCT ATCAGACTGCGTGGAGTGCTTCCAAGACGCTGTTGACAGTCTCCATCTGTCGCTGGGAGTGGTGAGGAACTTGGAGGTGGCTAACTTGGACGCTCAGATG GATGATTTGACCACCTGGCTCAGTGCTGCTTTGACGTATGAGGACACGTGCCTGGACGGGTTTGGAGATGTGGTTAAGAGGAGGAGGAAGAGTGAAGTTG AGATGGCGAAGGGTAGAGTGAGGAGAGTTGGTTACATAACGAGTAATGCTTTGGCTCTTGTTAGCAGGCTTGCTTCTACTGGCTTAGAGGCTACAAAGGC AACTTGA
AA sequence Show only first row Show all	>Lus10030370 pacid=23153205 polypeptide=Lus10030370 locus=Lus10030370.g ID=Lus10030370.BGIv1.0 annot-version=v1.0 MRDPVSYWLYMEEYLYDEFRPLLLFLSQLSCLSHSLLSHPTVFVPFPENQNLYFSGGYMAPPPPHKGLPDPRTSSIDSCAFHLHSWRPFNNLSPPKGSSD PSSRLSTYTLAKKPCRSDRATSFPIDSIDISRLSLIDDDGKSIPHPPSSAAVSPYRRGPLGILARKRPRRRGASRSVSGRSSDRSANRRCCSVGASAAHG TCSDFPVAIGTDSSGELFVNGGDPNWASDVSEARNSSKEEKDCLLVSHPHGGGQFGNLEAQVADSGYGSEPGYRGDAEFGYELLCLVMAMSLTKRKKIPG HCFGMRIQILRWRWLERTHCSLIRRLITDAVERNTIAAWSSLLDDFNKFLVSSSPHYRKGSRNRAALSDCVECFQDAVDSLHLSLGVVRNLEVANLDAQM DDLTTWLSAALTYEDTCLDGFGDVVKRRRKSEVEMAKGRVRRVGYITSNALALVSRLASTGLEATKAT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G02425			unknown protein		Lus10030370 [exp]	0	1
AT3G47500	DOF	CDF3, AtDof3,3	cycling DOF factor 3 (.1)		Lus10034461 [exp]	2.8	0.8607
AT1G06040	CO	BBX24, STO	SALT TOLERANCE, B-box domain p...		Lus10027041 [exp]	4.1	0.8923
AT1G53750		RPT1A	regulatory particle triple-A 1...		Lus10031815 [exp]	7.5	0.8151
AT3G26430			GDSL-like Lipase/Acylhydrolase...		Lus10036873 [exp]	8.3	0.8589
AT4G27310	CO		B-box type zinc finger family ...		Lus10033751 [exp]	9.5	0.8232
AT1G71800		CSTF64	cleavage stimulating factor 64...		Lus10014814 [exp]	9.8	0.7397
AT3G01060			unknown protein		Lus10030700 [exp]	11.2	0.8293
AT4G11660	HSF	AT-HSFB2B, HSFB...	HEAT SHOCK TRANSCRIPTION FACTO...		Lus10008007 [exp]	11.5	0.8404
AT3G18750		ZIK5, WNK6, ATW...	ARABIDOPSIS THALIANA WITH NO K...		Lus10030229 [exp]	12.0	0.8162
AT5G03340			ATPase, AAA-type, CDC48 protei...		Lus10021441 [exp]	12.4	0.8210

Compare expression of checked genes

Lus10030370 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.