Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G47680 1045 / 0 C3HZnF zinc finger (CCCH type) helicase family protein (.1) AT2G35920 135 / 5e-32 RNA helicase family protein (.1) AT2G01130 133 / 3e-31 DEA(D/H)-box RNA helicase family protein (.1) AT1G58050 121 / 2e-27 RNA helicase family protein (.1) AT1G48650 112 / 1e-24 DEA(D/H)-box RNA helicase family protein (.1), DEA(D/H)-box RNA helicase family protein (.2) AT1G58060 112 / 1e-24 RNA helicase family protein (.1) AT5G04895 104 / 2e-22 DEA(D/H)-box RNA helicase family protein (.1) AT2G30800 89 / 2e-17 ATVT-1, HVT1 helicase in vascular tissue and tapetum (.1) AT1G06670 88 / 4e-17 NIH nuclear DEIH-boxhelicase (.1) AT3G26560 81 / 5e-15 ATP-dependent RNA helicase, putative (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009643 [exp] 126 / 4e-29 AT1G48650 1469 / 0.0 DEA(D/H)-box RNA helicase family protein (.1), DEA(D/H)-box RNA helicase family protein (.2) Lus10009012 [exp] 126 / 5e-29 AT1G48650 1644 / 0.0 DEA(D/H)-box RNA helicase family protein (.1), DEA(D/H)-box RNA helicase family protein (.2) Lus10043459 [exp] 94 / 5e-19 AT5G04895 1897 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10034126 [exp] 89 / 2e-17 AT5G04895 1904 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10009022 [exp] 89 / 2e-17 AT2G35920 1447 / 0.0 RNA helicase family protein (.1) Lus10025616 [exp] 87 / 7e-17 AT1G33390 1175 / 0.0 FASCIATED STEM 4, RNA helicase family protein (.1) Lus10028066 [exp] 87 / 9e-17 AT1G33390 1148 / 0.0 FASCIATED STEM 4, RNA helicase family protein (.1) Lus10036991 [exp] 86 / 1e-16 AT1G27900 1089 / 0.0 RNA helicase family protein (.1) Lus10015812 [exp] 86 / 1e-16 AT1G27900 1097 / 0.0 RNA helicase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G031800 [exp] 1192 / 0 AT2G47680 1242 / 0.0 zinc finger (CCCH type) helicase family protein (.1) Potri.016G068900 [exp] 146 / 2e-35 AT2G35920 1474 / 0.0 RNA helicase family protein (.1) Potri.015G042500 [exp] 130 / 3e-30 AT1G48650 1629 / 0.0 DEA(D/H)-box RNA helicase family protein (.1), DEA(D/H)-box RNA helicase family protein (.2) Potri.010G246000 [exp] 129 / 4e-30 AT5G04895 1862 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.008G014100 [exp] 104 / 2e-22 AT5G04895 1835 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.010G057200 [exp] 85 / 2e-16 AT1G27900 1077 / 0.0 RNA helicase family protein (.1) Potri.012G034200 [exp] 82 / 2e-15 AT3G26560 1744 / 0.0 ATP-dependent RNA helicase, putative (.1) Potri.005G206500 [exp] 82 / 2e-15 AT2G30800 1374 / 0.0 helicase in vascular tissue and tapetum (.1) Potri.015G024400 [exp] 81 / 4e-15 AT3G26560 1768 / 0.0 ATP-dependent RNA helicase, putative (.1) Potri.017G050100 [exp] 81 / 4e-15 AT4G01020 1719 / 0.0 helicase domain-containing protein / IBR domain-containing protein / zinc finger protein-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00271 [flax] [poplar] Helicase_C Helicase conserved C-terminal domain CL0537 [flax] [poplar] CCCH_zf PF00642 [flax] [poplar] zf-CCCH Zinc finger C-x8-C-x5-C-x3-H type (and similar)
Representative CDS sequence Show only first row Show all	>Lus10030371 pacid=23153021 polypeptide=Lus10030371 locus=Lus10030371.g ID=Lus10030371.BGIv1.0 annot-version=v1.0 ATGAGTGAGGCAACGACGCCAACTTCTGCATGCGACTCTTTGCACTCTTGTCCGCTTTCGCTGTCTCCGTTCGCGGCTCTGCCGGTGACGGCGCTCAAGG ACAGGATCGTCGACAAAATCAGGGAAAATCGCGTTACTCTCATCGTCGGCGAGACTGGCTGCGGTTTAACAAACAAACCCTTGGCGAGCGGTGCTAATAC TATTTTACATTTCCTCTTGGTCTTGAAATCTCAAGGGAAGAGCTCTCAAGTTCCGCAGTTTCTTCTAGAGCAGAACATGGCACCTGTTCTGTGCACGTTA CCAAGGAGATTTGCCGTTGTTGCTGTTGCTACAATGGTGGCAAAAACTCGTAACTGTGAGCTTGGGCAAGAGGTTGGATATCACATTGGTCATTCCAAGG TCTTCACAAACAAACATGATCCCTCATTACTCAACTATAGGAGAGGGAATGCCTTTTATCTTTGTAAGGTGGAACAAACAAGATATGCACATGGTGTGCT CAACAGTTTAGTCATTCTGATATGGATTAGAGTCTTGGATTCAAAGATTGTGTTCAAGACAGCTGGAGTTTTGCTTGATGAAATGCGGGATAAAGGGTTT AACACACTCAAGTATAAGGTCATCATTCTTGATGAAGTGCATGAAAGATCTGTTGAGTCTGATCTTGTCCTTGTTTGTGTGAAGCAGTTTCTTCTAAGGA ACAATGACCTGAGGGTTGTTTTAATGTCTGCAACTGCTGATATTGGAAGATATCGGGACTACTTTAGAGATCTTGGCAGGGGGGAAAGAGTTGAAGTGCT TGCCATTCCTAGCCCTGATGGGAGAGTTATTTTCCAGAAGAATGTGTTATATCTTGAACAGGCAAGAATGTTTGTTTCAGTTTCTCGTGGGTTTCTATCT GACATGTTATCACTTGGCTGTCAACTCCTCCACATAATTGATGCTGGTATTCTGTTTTCCAAACAGATTTCAGAACTTCTTGGAATAAGCTCAGATTCCC TGGCTTCCAGATATTGTTCAGGATCAAGCCCTTTCTCGGCTGATGCTACTATGAAGTCTGACGTACATAAACTCATCTGTGATCTGATCCTGCACATCCA TCAAAATGAATTAGATATTGAAAAAGGGATTTTGGTCTTCCTTCCAACGTATCGTGACCTGTTGCAGCAGTGGTATCTTTTGAAGCAATTGACTTCACCT TTCAAAGTTCATGTTCTACACAGTAGCGTTGACACTATTCAAGCTCTTTTGTCTATGAGAGTTTGCAAGTCACATCGTAAGGTATGCCTTGAACTGGTAT TGCCTCACTGTGTGAGTAGTGCTGAGTGTATGTGTCACTCTGGTCAAAAGACCCAAGTAACTTGGGGTGCTATGGTAATATTGGCCACTAACATTGCAGA ATCATCTGTTACGATACCCAATGTGGCTCATGTCATTGATTCATGTCGATCTTTACAAGTTTACTGGAACCCCGCCACTAAAAGGGACTGCACAAACCTT GTTTGGGTTTCTAAATCTCAGGCTGATCAACGCAAAGGAAGAACTGGCCGAACTTGTGATGGTCAGATATACCGGTTGGTCCCGGGGTCATTTTTCGGTC AACTTGAGGACTACGAGTGTCCAGCTATACTGAAGCTATCATTGCGTTTGCAAGTGCTTCTGATCTGCTGTGCTTCCCCAAAGAGTATTAATGACCCCAA GGCTGGCCCTCAGGATCATGTTCTGATGTCTCCAGGCTTACTACGGAAGAGTCTGGATCCTCCCAGCCCCGAAGTTGTTGAAGATGCGTTGGATATGCTT GTAAGCATGAAAGCTTTGGATAAAACTTATCCTAGTGGTCGATACGTGCCAACCTTTTACGGGCAGCTACTTGCCAGTTTCTCACTGCCATTAGACGGAG CAGTTTTAATAGTAAAGTTTGGGAGTATCGGATTGCTGCGTGAAGGTGTTCTTTTGGCTGTTTTGATGGACACCGTACCTGTACCAATTCTTAATCCTTT TGGGGAGGATCATCAGTATACAGAATATGCTTGCAGTCACTATGGTGGGTATTGCAATAATACAGTCGAACTGGGTAAAAAGGAAATGTTGTTTCTTGGG AACTTGAATGCATATCAATTTTGGCAACGTGTTTTCAAGGACAAGCAACGAATAGAACGATTGAAGTACATTTCAGGAGGTGAGAGGAACATGCCCCTGC GACCAATGATTGAAGAAGAATGGTGCTCATTACATAACCTCTTGCAGCCAGCATTACAACATGTATCAGAGAGATATGAAGATATAATGAGTTCATTACA TCGATTTCGGCCAGAATTTCTTGGTCATTCTGATGGCTTACCAGTCTATTATGAGCCTAGTGAATATAATCACACATGCCATATACAATGTCAGCCACTC AAGGAGAGTGTTGTCACCACTGCGGAAAATGACCAGCAACATGAAGTGCTTACTCAACTGTGTATTGATACACCATTTGTTGCTTCTGATCAGTTCAAAA CCATTAATGTAGCCAGAAGGTTTTCAAAAATTATCAGTCAGATAAGGGGTCAGCATACAGACGAGATGCCTGAAAATCTAGCTGATTATTCTGATAGCGA GGAGTCTCATGTCACTGAGGCCGCTACTCTATGTGTATATTTTGTGAAAGGATCCTGTAACAGAGGCAATCAGTGCCCGTTTTCTCATTCATTTGAAGCA AAGAGACCTCCATGCAAATTCATATATTCTTTGCAGGGCTGTCGAAACGGGGAGTTCTGCCAGTACTCTCACGACTCGGGTCAGTCGATGCCGTTATTCA TCTCGACCTCAATATGTCTGCCGGAGGAAGGTGGAGCAAATGCTACATCCCTTCTGGAATTGTTTCCGGCATCTTCCGATGGATGCATCCTGTTATTGGA CGACCCAGATCTACATTTATCTTCGAAAATCGCTTCTCACTGCGATCCATCCCAAATGATAACCACGACAAGCATGTCACACACCTCCATCTTTGACCCT GCGTTGGCTGGCGTGCGGATTCTGTGGGGACTCCGCGATCCCCACGAGACAATTCTTTCCGGAGGCAAATGGGATGAGGTTCCATGGAGGCAAGTCCAGT GCATTCTGTGGTTCCCTAACTTCGAAACCTACAGCGAAGACAGGGAGAAACAACAGAATGTCGTACAGAAGTTGTTTGAACATTTGGCTATCCGAGTAAT AGCTGACACATTAAACGAAGTTCGACTTGTCATTATCACCAACAACATCAAATTCTCTCAGTTGCAGGTGGAAAAACTGGGGAGAGAATGTTTCTTTTTC CTTCGGGAATCCTTCCCATTTGATGAAGCAACTTTTGGTAAGATGCCCATAACAGTGGCTGTACAGAAGGCGATGGTCACATCCAAAACGGTGGCGTATG TATTCAAAATGTGCCCACCAAGCGACGCTATGTTGGGAGATTACGCAGCTGCTATCCGGAAAGAGTTGTTGGGTAAAGACGGTGAGTGGGGAAGCTCGGC ACTGCTGCATATGCGAGACCTGGAAAGTGTCATGAAAGGACTGAAGGTGTAA
AA sequence Show only first row Show all	>Lus10030371 pacid=23153021 polypeptide=Lus10030371 locus=Lus10030371.g ID=Lus10030371.BGIv1.0 annot-version=v1.0 MSEATTPTSACDSLHSCPLSLSPFAALPVTALKDRIVDKIRENRVTLIVGETGCGLTNKPLASGANTILHFLLVLKSQGKSSQVPQFLLEQNMAPVLCTL PRRFAVVAVATMVAKTRNCELGQEVGYHIGHSKVFTNKHDPSLLNYRRGNAFYLCKVEQTRYAHGVLNSLVILIWIRVLDSKIVFKTAGVLLDEMRDKGF NTLKYKVIILDEVHERSVESDLVLVCVKQFLLRNNDLRVVLMSATADIGRYRDYFRDLGRGERVEVLAIPSPDGRVIFQKNVLYLEQARMFVSVSRGFLS DMLSLGCQLLHIIDAGILFSKQISELLGISSDSLASRYCSGSSPFSADATMKSDVHKLICDLILHIHQNELDIEKGILVFLPTYRDLLQQWYLLKQLTSP FKVHVLHSSVDTIQALLSMRVCKSHRKVCLELVLPHCVSSAECMCHSGQKTQVTWGAMVILATNIAESSVTIPNVAHVIDSCRSLQVYWNPATKRDCTNL VWVSKSQADQRKGRTGRTCDGQIYRLVPGSFFGQLEDYECPAILKLSLRLQVLLICCASPKSINDPKAGPQDHVLMSPGLLRKSLDPPSPEVVEDALDML VSMKALDKTYPSGRYVPTFYGQLLASFSLPLDGAVLIVKFGSIGLLREGVLLAVLMDTVPVPILNPFGEDHQYTEYACSHYGGYCNNTVELGKKEMLFLG NLNAYQFWQRVFKDKQRIERLKYISGGERNMPLRPMIEEEWCSLHNLLQPALQHVSERYEDIMSSLHRFRPEFLGHSDGLPVYYEPSEYNHTCHIQCQPL KESVVTTAENDQQHEVLTQLCIDTPFVASDQFKTINVARRFSKIISQIRGQHTDEMPENLADYSDSEESHVTEAATLCVYFVKGSCNRGNQCPFSHSFEA KRPPCKFIYSLQGCRNGEFCQYSHDSGQSMPLFISTSICLPEEGGANATSLLELFPASSDGCILLLDDPDLHLSSKIASHCDPSQMITTTSMSHTSIFDP ALAGVRILWGLRDPHETILSGGKWDEVPWRQVQCILWFPNFETYSEDREKQQNVVQKLFEHLAIRVIADTLNEVRLVIITNNIKFSQLQVEKLGRECFFF LRESFPFDEATFGKMPITVAVQKAMVTSKTVAYVFKMCPPSDAMLGDYAAAIRKELLGKDGEWGSSALLHMRDLESVMKGLKV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G47680	C3HZnF		zinc finger (CCCH type) helica...		Lus10030371 [exp]	0	1
AT2G46980			unknown protein		Lus10038019 [exp]	1.7	0.9485
AT1G15750		TPL, WSIP1	WUS-INTERACTING PROTEIN 1, TOP...		Lus10011481 [exp]	2.0	0.9364
AT2G40030		NRPE1, DMS5, AT...	DEFECTIVE IN MERISTEM SILENCIN...		Lus10016332 [exp]	6.9	0.9345
AT1G04950		EMB2781, ATTAF6...	TBP-associated factor 6, EMBRY...		Lus10033805 [exp]	8.0	0.9081
AT4G17000			unknown protein		Lus10035651 [exp]	8.9	0.9451
AT2G26180		IQD6	IQ-domain 6 (.1)		Lus10014870 [exp]	11.1	0.9395
AT3G10310			P-loop nucleoside triphosphate...		Lus10035442 [exp]	12.3	0.9282
AT5G43310			COP1-interacting protein-relat...		Lus10021172 [exp]	12.4	0.9160
AT2G04660		APC2	anaphase-promoting complex/cyc...		Lus10026619 [exp]	13.4	0.9271
AT3G30300			O-fucosyltransferase family pr...		Lus10005094 [exp]	13.6	0.9087

Compare expression of checked genes

Lus10030371 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.