Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02440 395 / 2e-138 EID1 EMPFINDLICHER IM DUNKELROTEN LICHT 1, F-box family protein (.1) AT5G15440 52 / 2e-07 EDL1 EID1-like 1 (.1) AT5G39360 49 / 1e-06 EDL2 EID1-like 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007870 [exp] 569 / 0 AT4G02440 399 / 9e-140 EMPFINDLICHER IM DUNKELROTEN LICHT 1, F-box family protein (.1) Lus10028001 [exp] 53 / 9e-08 AT3G63060 312 / 6e-107 EID1-like 3 (.1) Lus10025639 [exp] 52 / 2e-07 AT5G39360 429 / 2e-154 EID1-like 2 (.1) Lus10029662 [exp] 50 / 6e-07 AT5G39360 423 / 4e-152 EID1-like 2 (.1) Lus10018196 [exp] 49 / 2e-06 AT5G39360 364 / 6e-129 EID1-like 2 (.1) Lus10042699 [exp] 49 / 2e-06 AT5G39360 428 / 4e-154 EID1-like 2 (.1) Lus10000659 [exp] 48 / 3e-06 AT3G63060 212 / 1e-68 EID1-like 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G130000 [exp] 425 / 6e-150 AT4G02440 370 / 2e-128 EMPFINDLICHER IM DUNKELROTEN LICHT 1, F-box family protein (.1) Potri.002G205150 [exp] 419 / 7e-148 AT4G02440 371 / 9e-129 EMPFINDLICHER IM DUNKELROTEN LICHT 1, F-box family protein (.1) Potri.017G090300 [exp] 52 / 2e-07 AT5G39360 415 / 1e-148 EID1-like 2 (.1) Potri.004G125000 [exp] 51 / 2e-07 AT5G39360 418 / 4e-150 EID1-like 2 (.1) Potri.019G023500 [exp] 44 / 9e-05 ND /
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10030373 pacid=23153169 polypeptide=Lus10030373 locus=Lus10030373.g ID=Lus10030373.BGIv1.0 annot-version=v1.0 ATGGACGCATTCGCCAAGCTCTCCGACGACCTACTCCTCAAAATCCTCTTCAACCTTCAAGACGACCCTCGCAACTGGTCCCGACTCGCCTGCGTCTGCT CCAAGTTCTCCTCTCTCGTCCGCAACACCTGCTGGAAGTCCAAATGCTACTCCACTATCCCCGCCCTCGTCGCCGATCTCCTCCCTTCTGATTCTTCCAA CTCTGCCGTCGCCGTCCCCGGTGGCTGGTCTGCTCTCTACAAGCTCGCCGTCTGCTGCCCTGGCCTCCTCCTCTCCGGGGTCCTCCTTGAACACTCCGAT TTCGGCCTCGATCTGGATCTCGGCCCTGAGGAGAATTTCCCTAGACCTTCCTCCTCCTCCTCCAGCTCATCCGGTTTGTTATTACAAGATTCCTCTTATG CAAATCTGGCCGTCGCCGATTGCTCGTGGTCGTTATTCGACGATCTCTATTGTGACACTGTTTATAACGTAGACGAACCGTCTGAAGCTCGTCCCGCACA AGAGGTTGGGGACGATGATACCGCCGCCGCAACCGCTGTCGCCATTGTTAAGCTGGGAACAGATGCTACGCTGCTGCCTCGTAAGCGGAGAAAGATCTGC AGGTCGATGCGGTCTCATTTGGCGACCGGAGTGTGGAACCTGAGCCGTGAGCAAGGGAACAAGTTGCTGGCGAGTCGGTTCCGTGGGGACTGTCTGTACA TCTGTGATTGGCCTGGCTGTGTTCACGTCGAGGAGAAGAGGAACTACAATCTCTTCAGAGGGTTTTTCAAGAACTTTAAGCGGTCTAGAGTTTGGAGGAC GATAAATGATGGCAATAGAAAGAAGATCGATGTCAATTGTGCCTTCTGTGAGTGTAGACAGACCTGGGATCTCCACTCTGCTTTCTGCTTGAGGAGAGTT TATGGCTTCCACGACGATGGCGAGCCTGTTGTCCGAGCTTATGTATGTGAAAATGGCCATGTCTCCGGGGCCTGGACCGACTTGCCCTTGTATACTTGA
AA sequence Show only first row Show all	>Lus10030373 pacid=23153169 polypeptide=Lus10030373 locus=Lus10030373.g ID=Lus10030373.BGIv1.0 annot-version=v1.0 MDAFAKLSDDLLLKILFNLQDDPRNWSRLACVCSKFSSLVRNTCWKSKCYSTIPALVADLLPSDSSNSAVAVPGGWSALYKLAVCCPGLLLSGVLLEHSD FGLDLDLGPEENFPRPSSSSSSSSGLLLQDSSYANLAVADCSWSLFDDLYCDTVYNVDEPSEARPAQEVGDDDTAAATAVAIVKLGTDATLLPRKRRKIC RSMRSHLATGVWNLSREQGNKLLASRFRGDCLYICDWPGCVHVEEKRNYNLFRGFFKNFKRSRVWRTINDGNRKKIDVNCAFCECRQTWDLHSAFCLRRV YGFHDDGEPVVRAYVCENGHVSGAWTDLPLYT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G02440		EID1	EMPFINDLICHER IM DUNKELROTEN L...		Lus10030373 [exp]	0	1
AT5G65720		ATNIFS1, NIFS1 ...	NITROGEN FIXATION S HOMOLOG 1,...		Lus10019252 [exp]	1.4	0.9152
AT3G18490			Eukaryotic aspartyl protease f...		Lus10032482 [exp]	3.7	0.9109
AT4G16490			ARM repeat superfamily protein...		Lus10017563 [exp]	5.5	0.9106
AT5G46800		BOU	A BOUT DE SOUFFLE, Mitochondri...		Lus10000906 [exp]	6.0	0.9009
AT5G03110			unknown protein		Lus10019920 [exp]	8.9	0.8975
AT5G51720			2 iron, 2 sulfur cluster bindi...		Lus10031686 [exp]	10.1	0.8944
AT4G16490			ARM repeat superfamily protein...		Lus10010499 [exp]	10.2	0.8942
AT4G14690		ELIP2	EARLY LIGHT-INDUCIBLE PROTEIN ...		Lus10039379 [exp]	12.8	0.8841
					Lus10026705 [exp]	14.0	0.8565
AT4G37260	MYB	ATMYB73	myb domain protein 73 (.1)		Lus10030336 [exp]	15.7	0.8675

Compare expression of checked genes

Lus10030373 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.