Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G02860 356 / 1e-122 BAH1, NLA nitrogen limitation adaptation, BENZOIC ACID HYPERSENSITIVE 1, SPX (SYG1/Pho81/XPR1) domain-containing protein (.1), SPX (SYG1/Pho81/XPR1) domain-containing protein (.2) AT2G38920 213 / 2e-66 SPX (SYG1/Pho81/XPR1) domain-containing protein / zinc finger (C3HC4-type RING finger) protein-related AT1G18660 46 / 2e-05 zinc finger (C3HC4-type RING finger) family protein (.1), zinc finger (C3HC4-type RING finger) family protein (.2), zinc finger (C3HC4-type RING finger) family protein (.3), zinc finger (C3HC4-type RING finger) family protein (.4) AT4G28270 43 / 8e-05 ATRMA2 RING membrane-anchor 2 (.1) AT3G27330 44 / 0.0001 zinc finger (C3HC4-type RING finger) family protein (.1) AT4G03510 41 / 0.0005 ATRMA1, RMA1 RING membrane-anchor 1 (.1.2) AT4G27470 41 / 0.0006 ATRMA3 RING membrane-anchor 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007867 [exp] 253 / 9e-85 AT1G02860 199 / 3e-64 nitrogen limitation adaptation, BENZOIC ACID HYPERSENSITIVE 1, SPX (SYG1/Pho81/XPR1) domain-containing protein (.1), SPX (SYG1/Pho81/XPR1) domain-containing protein (.2) Lus10015986 [exp] 204 / 3e-63 AT2G38920 389 / 1e-135 SPX (SYG1/Pho81/XPR1) domain-containing protein / zinc finger (C3HC4-type RING finger) protein-related Lus10012290 [exp] 203 / 1e-62 AT2G38920 392 / 5e-137 SPX (SYG1/Pho81/XPR1) domain-containing protein / zinc finger (C3HC4-type RING finger) protein-related Lus10007868 [exp] 114 / 3e-31 AT1G02860 87 / 3e-21 nitrogen limitation adaptation, BENZOIC ACID HYPERSENSITIVE 1, SPX (SYG1/Pho81/XPR1) domain-containing protein (.1), SPX (SYG1/Pho81/XPR1) domain-containing protein (.2) Lus10015722 [exp] 49 / 4e-06 AT1G18660 667 / 0.0 zinc finger (C3HC4-type RING finger) family protein (.1), zinc finger (C3HC4-type RING finger) family protein (.2), zinc finger (C3HC4-type RING finger) family protein (.3), zinc finger (C3HC4-type RING finger) family protein (.4) Lus10019075 [exp] 49 / 4e-06 AT1G18660 583 / 0.0 zinc finger (C3HC4-type RING finger) family protein (.1), zinc finger (C3HC4-type RING finger) family protein (.2), zinc finger (C3HC4-type RING finger) family protein (.3), zinc finger (C3HC4-type RING finger) family protein (.4) Lus10032119 [exp] 43 / 0.0002 AT3G27330 251 / 1e-75 zinc finger (C3HC4-type RING finger) family protein (.1) Lus10022324 [exp] 43 / 0.0003 AT3G27330 251 / 4e-75 zinc finger (C3HC4-type RING finger) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G130300 [exp] 402 / 5e-141 AT1G02860 448 / 3e-159 nitrogen limitation adaptation, BENZOIC ACID HYPERSENSITIVE 1, SPX (SYG1/Pho81/XPR1) domain-containing protein (.1), SPX (SYG1/Pho81/XPR1) domain-containing protein (.2) Potri.002G205400 [exp] 402 / 6e-141 AT1G02860 437 / 5e-155 nitrogen limitation adaptation, BENZOIC ACID HYPERSENSITIVE 1, SPX (SYG1/Pho81/XPR1) domain-containing protein (.1), SPX (SYG1/Pho81/XPR1) domain-containing protein (.2) Potri.016G064600 [exp] 215 / 2e-67 AT2G38920 414 / 2e-145 SPX (SYG1/Pho81/XPR1) domain-containing protein / zinc finger (C3HC4-type RING finger) protein-related Potri.006G198600 [exp] 211 / 6e-66 AT2G38920 390 / 3e-136 SPX (SYG1/Pho81/XPR1) domain-containing protein / zinc finger (C3HC4-type RING finger) protein-related Potri.013G132300 [exp] 44 / 7e-05 AT4G03510 191 / 2e-60 RING membrane-anchor 1 (.1.2) Potri.001G336832 [exp] 44 / 8e-05 AT3G27330 235 / 2e-69 zinc finger (C3HC4-type RING finger) family protein (.1) Potri.012G068100 [exp] 44 / 0.0001 AT1G18660 679 / 0.0 zinc finger (C3HC4-type RING finger) family protein (.1), zinc finger (C3HC4-type RING finger) family protein (.2), zinc finger (C3HC4-type RING finger) family protein (.3), zinc finger (C3HC4-type RING finger) family protein (.4) Potri.011G120800 [exp] 41 / 0.0008 AT4G27470 167 / 7e-51 RING membrane-anchor 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03105 [flax] [poplar] SPX SPX domain
Representative CDS sequence Show only first row Show all	>Lus10030375 pacid=23153165 polypeptide=Lus10030375 locus=Lus10030375.g ID=Lus10030375.BGIv1.0 annot-version=v1.0 ATGAAGTTCTGCAAGAAGTACCAGGAGTACATGCAAAGGCAGGATGATCAGAAGAAGCAACAGCTGCCTCGCCTGGGTTTCAAGAGCCTCAAGAAGCTAC TCAAGCGCTGCAGATCGCAATCTCATCACGGTGCCGCCTCCGCCGCCTGCTCTTGCTCCGGTTGCGATGATAAGTTCTTCCCTTCATTGGCGGAGGAGAT GTCGAGCATCGTGGGTTGCTTCAATCAGCGAGCTGAGAGATTGATCGTGGATCTCCATCTCGGATCCTCTGGCTTCATCAGGAGATGCTTCATGTGGTTC AGTGTCAGGTTGCAAGGTATTAGTGATGGCGATTTGATTCGAGAAGGGAACGATTTGGTTACGTATGCCCTAATCAACGCCGTCGCCATCAGGAAAATAC TCAAGAAGTACGATAAGATTCATTACTCAAAGCAAGGGCAGGCATTTAAGACAAAAGCTCAGAGTATGAACATCGAGATCCTTCACTCTCCATGGCTATG CGAGCTCATGGCTTTCCATATCAACTTGAGAGCAACATCAAACATCTCACCTCCTGCTGCTTCTGCTTCTGTTGCTTCGAATCTATTCCAGGGCTCCTCC CTTGCTTTCCATGGTGAAAAGCCATCACTGTCTTGTGACCTCTTTGACTCGATCAAGGTTGATATTGATCTCACTTGCTCCATATGTCTGGTTGACATTG ATCTCACTTGCTTCATATGCCTGGAGACGGTATTCGATCCAGTTTCACTGAGATGCGGCCATATCTTCTGCTATATCTGTGCTTGTTCAGCTGCTTCGGT AACAATCGTTGATGGACTCCAGTCTGCTGATCCTCAACGGAAATGCCCTCTTTGCAGGGAGACTGGAGTTTTTGAAGGTGCTGTGCACTTGGAAGAGCTT AACATTCTATTAAGCCAGAGTTGCAAAGAGTATTGGGAAGAGAGGCTTCAATCAGAAAGGCGAGAGAGGGTTAAGCAAGCAAAACAGCACTGGGAAAACC AGTCTCGGGCATTCATGGGGATCTAG
AA sequence Show only first row Show all	>Lus10030375 pacid=23153165 polypeptide=Lus10030375 locus=Lus10030375.g ID=Lus10030375.BGIv1.0 annot-version=v1.0 MKFCKKYQEYMQRQDDQKKQQLPRLGFKSLKKLLKRCRSQSHHGAASAACSCSGCDDKFFPSLAEEMSSIVGCFNQRAERLIVDLHLGSSGFIRRCFMWF SVRLQGISDGDLIREGNDLVTYALINAVAIRKILKKYDKIHYSKQGQAFKTKAQSMNIEILHSPWLCELMAFHINLRATSNISPPAASASVASNLFQGSS LAFHGEKPSLSCDLFDSIKVDIDLTCSICLVDIDLTCFICLETVFDPVSLRCGHIFCYICACSAASVTIVDGLQSADPQRKCPLCRETGVFEGAVHLEEL NILLSQSCKEYWEERLQSERRERVKQAKQHWENQSRAFMGI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G02860		BAH1, NLA	nitrogen limitation adaptation...		Lus10030375 [exp]	0	1
AT5G55060			unknown protein		Lus10040061 [exp]	1.0	0.9599
AT4G26100		CKL1, CK1	casein kinase 1 (.1)		Lus10021580 [exp]	3.5	0.9400
AT5G03330			Cysteine proteinases superfami...		Lus10026525 [exp]	3.5	0.9467
					Lus10021689 [exp]	4.9	0.9444
AT1G27170			transmembrane receptors;ATP bi...		Lus10005171 [exp]	6.2	0.9391
AT1G08110			lactoylglutathione lyase famil...		Lus10016138 [exp]	6.3	0.9464
AT2G05630		ATG8D	Ubiquitin-like superfamily pro...		Lus10027186 [exp]	6.7	0.9429
AT5G05320			FAD/NAD(P)-binding oxidoreduct...		Lus10034468 [exp]	7.0	0.9450
AT4G24740		AME1, AFC2	FUS3-complementing gene 2 (.1....		Lus10043309 [exp]	7.3	0.9453
AT5G03560			Tetratricopeptide repeat (TPR)...		Lus10027932 [exp]	7.5	0.9371

Compare expression of checked genes

Lus10030375 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.