Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02460 913 / 0 PMS1 POSTMEIOTIC SEGREGATION 1, DNA mismatch repair protein, putative (.1) AT4G09140 160 / 1e-40 ATMLH1 ARABIDOPSIS THALIANA MUTL-HOMOLOGUE 1, MUTL-homologue 1 (.1) AT4G35520 94 / 3e-19 MLH3, ATMLH3 MUTL protein homolog 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007866 [exp] 1391 / 0 AT4G02460 763 / 0.0 POSTMEIOTIC SEGREGATION 1, DNA mismatch repair protein, putative (.1) Lus10010284 [exp] 548 / 0 AT4G02460 193 / 3e-55 POSTMEIOTIC SEGREGATION 1, DNA mismatch repair protein, putative (.1) Lus10033274 [exp] 153 / 3e-38 AT4G09140 1066 / 0.0 ARABIDOPSIS THALIANA MUTL-HOMOLOGUE 1, MUTL-homologue 1 (.1) Lus10034734 [exp] 130 / 8e-31 AT4G09140 504 / 3e-167 ARABIDOPSIS THALIANA MUTL-HOMOLOGUE 1, MUTL-homologue 1 (.1) Lus10016691 [exp] 100 / 3e-21 AT4G35520 360 / 8e-105 MUTL protein homolog 3 (.1) Lus10035985 [exp] 86 / 1e-16 AT4G35520 354 / 1e-102 MUTL protein homolog 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G130800 [exp] 1023 / 0 AT4G02460 936 / 0.0 POSTMEIOTIC SEGREGATION 1, DNA mismatch repair protein, putative (.1) Potri.019G078700 [exp] 160 / 2e-40 AT4G09140 1071 / 0.0 ARABIDOPSIS THALIANA MUTL-HOMOLOGUE 1, MUTL-homologue 1 (.1) Potri.005G101900 [exp] 103 / 3e-22 AT4G35520 763 / 0.0 MUTL protein homolog 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08676 [flax] [poplar] MutL_C MutL C terminal dimerisation domain CL0329 [flax] [poplar] S5 PF01119 [flax] [poplar] DNA_mis_repair DNA mismatch repair protein, C-terminal domain CL0025 [flax] [poplar] His_Kinase_A PF02518 [flax] [poplar] HATPase_c Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
Representative CDS sequence Show only first row Show all	>Lus10030376 pacid=23153019 polypeptide=Lus10030376 locus=Lus10030376.g ID=Lus10030376.BGIv1.0 annot-version=v1.0 ATGGCTGCTGGCTCTTCTTCTTCTCCGGCGGCGGCGATTAAGCCGATAAACAGAAGCGTGGTGCACAGAATCTGCGCCGGTCAAGTCATTTTGGACCTTC CATCTGCTGTGAAGGAGCTCGTGGAGAACAGCTTGGACGCCGGCGCCACCAGCATCGAAATCTGCCTCAAAGAGCACGGCGAAGAGTGGTTCCAGGTCAT TGACAACGGCTGCGGCATCTCTCCGGATGATTACAAGGTTGTTGCACTTAAGCATCACACATCGAAGCTGTGTGATTTTCCGGATCTTCAAACCATGGCG ACGTTTGGTTTCAGAGGGGAAGCGATCAGCTCCCTGTGCGCGTTAGGAGATGTGACCATCGAGACCAGAACCAAGAACGAGACGATAGCAACTCACCTGA GTTTTGACCACTCGGGTGTATTGGTTGGAGAAAGGAGACTAGCAAGGCAGGTTGGGACGACTGTGACGGTTAAGAAGCTCTTCTCCAATTTGCCAGTAAG GAGCAAGGAGTTCAAGCGAAACATACGCAAAGAGTTCGGGAAGCTTATTTCCTTGCTCAATGCATATGCACTTATCGCGAAAGGTGTCCGGTTTATCTGT AGCAATACAACTGCAAAAAATGTGAAGTCTGTGGTACTGAAAACACAGGGTAGTGATTCCTTGAAGGACAATATCATAAATGTTCTTGGTGTGAACATCT TCGGCTGCTTACAGATGGTGAGCATACCTATATCAGATGGCTGCAAAGTTGAGGGCTTCCTTTCTAAGCCTGGACAGGGAAGTGGGCGTAATTTGGGAGA TAGACAATACTATTTCGTAAATGGTCGGCCAGTTGATATGCCCAAGGTCAACAAACTTATCAACGAGTTATACAAGGGGGCAAACTCCAGACAATATCCT ATTACAATACTGAATTTCACGCTCCCGACCAACGAATGTGATGTCAATGTGACTCCTGATAAGAGAAAAGTATTCTTTTCTGATGAGAGCGTGATACTGC TTGCCCTAAGGGAGGGTTTGCAGCAGATTTATTCCCCTAGTAACGCCTCTTATACCGTTAATCAATTAGAAGAGTGCACCGATGTAGCAGAGAGCCCTAA GTTATCTTCTTCTGCGAGGAAGTCTTCTTTGTTGTCAAAACAGGAGTCGTCTGAAGATGGTAGAGGCAGCAAAGAGACCTGCATAGATAATGATGGGGCC ATTGTAAGTATTCCTTTTGATGGTGTTGAAACTGAGCCTGAGCCATTTGATGCTAGTAAAAGACTGAGCACCGGAATTGATGAGAAGTTTGCAATGAAGA GATTTGGTATTGGATTGCATCGAAGTAACACGACTGATTCACCAAATAAGAGTAGTAAAGTCCCAAGCCCTCTCAATGTTGATTTGGATCAAAATTCTCC ATCTACCGATAGAGTTATTGAGAAAGATGTTAACAATACGGATGGGAGTATTGCATTATCCGCTGTGCAGTCAACACTGAAGAAGTTTGTAACTGTAAAT AAGAGGAAGCATGAAGATATTGGTCCACCAGTATCTGAAATTCCTGTTCTAAGAAACCAAATTGTTCATTCTCCTCCAGAAAAGAGAACTTCTGGAGTGT GTGGGGCTGATAAAAGCCTGTTTGTTGCTCATCGACGAAGCAGTTATTTTGATAACTTGATGGAGACTGAGATACCCAATAATCTTGGAGCAGATAAGTC GACAAGTTCCTTGCTGTCTGGTATATCTGCACATGTTGAAGAAGGAAAGGAGGAGCCTGTGGTTGAAGGGAACCTATTATTTACAGAGGAAGCTGCACGT GCAATTTCAGAAGATGCTCGCTGTGATGTGATGGTTGATGCTCCAGTGCCATCTGCTGCAAAGAAGACGACTTCCACGCTGCAGTTTAGCTCTCAAGACT TGACGGCAAAGAGGAAACATATACAGTCAAGATTGAAGTCCCACGATGGTGCTAGTGACATCATTAACATTACGAGTCATCGGAACTATGCTGCTGCCAC AATGGAGCTTTCTCAACCTGAGGATGGTGAGCGTAAATCTAAAGCTTCAGCAGCTGCAACTACCGAGTTGGATAGACTTTTCAAGAAAGAGGACTTTGGC AGAATGAAGGTGATAGGCCAATTCAATCTTGGATTTATCATCGGGAAGCTAGACAAAGACCTGTTTATTGTGGATCAGCACGCAGCCGATGAGAAATATA ATTTTGAGCGGCTGTGCCAGTCAACCATCTTGAACCAGCAGCCGTTGCTTCGGCCGTTGAGGTTAGAGTTGACACCAGAGGAGGAAGTAGTTGCAGCCAT GAACATGGACATAATCAGGAGAAATGGATTTTCTTTGGAAGAAGATGAAAACGCACCCCTGGGATTTCGATTCAAACTGAAAGCCGTTCCTTTCAGCAAG AACATAACCTTTGGCGTTGAAGATGTGAAGGACTTGATTTCCAGTCTTGGTGATGACAATGAAGGAACAGTGCTAAGCAGTTACAAGACGGACACTGTCG ACTCGGTCTGCCCATCCAGAGTTAGGGCTATGCTGGCTAACCGTGCTTGTCGGTCATCTGTAATGATTGGTGATCCGCTCAACAGGAACGAGATGCTAAC GATACTGGAACATCTATCAGATCTAAAATCGCCATGGAACTGTCCTCATGGCCGACCAACCATGAGACACTTGGTTGACTTGACATCTGTGCACCGTAAA TCTTAG
AA sequence Show only first row Show all	>Lus10030376 pacid=23153019 polypeptide=Lus10030376 locus=Lus10030376.g ID=Lus10030376.BGIv1.0 annot-version=v1.0 MAAGSSSSPAAAIKPINRSVVHRICAGQVILDLPSAVKELVENSLDAGATSIEICLKEHGEEWFQVIDNGCGISPDDYKVVALKHHTSKLCDFPDLQTMA TFGFRGEAISSLCALGDVTIETRTKNETIATHLSFDHSGVLVGERRLARQVGTTVTVKKLFSNLPVRSKEFKRNIRKEFGKLISLLNAYALIAKGVRFIC SNTTAKNVKSVVLKTQGSDSLKDNIINVLGVNIFGCLQMVSIPISDGCKVEGFLSKPGQGSGRNLGDRQYYFVNGRPVDMPKVNKLINELYKGANSRQYP ITILNFTLPTNECDVNVTPDKRKVFFSDESVILLALREGLQQIYSPSNASYTVNQLEECTDVAESPKLSSSARKSSLLSKQESSEDGRGSKETCIDNDGA IVSIPFDGVETEPEPFDASKRLSTGIDEKFAMKRFGIGLHRSNTTDSPNKSSKVPSPLNVDLDQNSPSTDRVIEKDVNNTDGSIALSAVQSTLKKFVTVN KRKHEDIGPPVSEIPVLRNQIVHSPPEKRTSGVCGADKSLFVAHRRSSYFDNLMETEIPNNLGADKSTSSLLSGISAHVEEGKEEPVVEGNLLFTEEAAR AISEDARCDVMVDAPVPSAAKKTTSTLQFSSQDLTAKRKHIQSRLKSHDGASDIINITSHRNYAAATMELSQPEDGERKSKASAAATTELDRLFKKEDFG RMKVIGQFNLGFIIGKLDKDLFIVDQHAADEKYNFERLCQSTILNQQPLLRPLRLELTPEEEVVAAMNMDIIRRNGFSLEEDENAPLGFRFKLKAVPFSK NITFGVEDVKDLISSLGDDNEGTVLSSYKTDTVDSVCPSRVRAMLANRACRSSVMIGDPLNRNEMLTILEHLSDLKSPWNCPHGRPTMRHLVDLTSVHRK S

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G02460		PMS1	POSTMEIOTIC SEGREGATION 1, DNA...		Lus10030376 [exp]	0	1
AT2G34930			disease resistance family prot...		Lus10016341 [exp]	2.0	0.8521
AT2G46060			transmembrane protein-related ...		Lus10002472 [exp]	6.3	0.8527
AT5G24310		ABIL3	ABL interactor-like protein 3 ...		Lus10005919 [exp]	10.1	0.8740
AT4G33620			Cysteine proteinases superfami...		Lus10020445 [exp]	11.0	0.8449
AT1G16540		ACI2, ABA3, SIR...	SIRTINOL RESISTANT 3, LOW OSMO...		Lus10031768 [exp]	14.7	0.7968
AT5G27410			D-aminoacid aminotransferase-l...		Lus10029984 [exp]	20.9	0.8266
AT1G55250		HUB2, HISTONEMO...	histone mono-ubiquitination 2 ...		Lus10024057 [exp]	21.4	0.8454
AT1G76480			unknown protein		Lus10006035 [exp]	21.8	0.8525
AT3G52820		ATPAP22, PAP22	purple acid phosphatase 22 (.1...		Lus10021378 [exp]	22.0	0.7946
AT2G36360			Galactose oxidase/kelch repeat...		Lus10043424 [exp]	23.6	0.8218

Compare expression of checked genes

Lus10030376 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.