Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G23750 120 / 1e-34 Remorin family protein (.1.2) AT2G45820 119 / 3e-34 Remorin family protein (.1) AT3G48940 116 / 3e-33 Remorin family protein (.1) AT3G61260 115 / 1e-32 Remorin family protein (.1) AT4G00670 65 / 1e-13 Remorin family protein (.1) AT1G63295 46 / 1e-06 Remorin family protein (.1) AT2G41870 44 / 1e-05 Remorin family protein (.1) AT3G57540 43 / 3e-05 Remorin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014785 [exp] 211 / 2e-70 AT3G61260 177 / 1e-56 Remorin family protein (.1) Lus10018840 [exp] 135 / 4e-40 AT3G61260 206 / 1e-67 Remorin family protein (.1) Lus10017811 [exp] 132 / 9e-39 AT3G61260 199 / 5e-65 Remorin family protein (.1) Lus10039215 [exp] 111 / 7e-31 AT3G61260 196 / 7e-64 Remorin family protein (.1) Lus10027460 [exp] 108 / 1e-29 AT3G61260 192 / 2e-62 Remorin family protein (.1) Lus10008014 [exp] 86 / 8e-22 AT5G23750 158 / 5e-50 Remorin family protein (.1.2) Lus10001477 [exp] 88 / 2e-21 AT5G23750 162 / 3e-50 Remorin family protein (.1.2) Lus10008477 [exp] 86 / 1e-20 AT5G23750 154 / 5e-47 Remorin family protein (.1.2) Lus10024514 [exp] 71 / 1e-15 AT5G23750 113 / 5e-32 Remorin family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G081300 [exp] 130 / 3e-38 AT3G61260 199 / 4e-65 Remorin family protein (.1) Potri.002G157700 [exp] 124 / 8e-36 AT3G61260 167 / 2e-52 Remorin family protein (.1) Potri.015G143600 [exp] 110 / 1e-30 AT5G23750 111 / 1e-30 Remorin family protein (.1.2) Potri.012G140800 [exp] 110 / 1e-30 AT5G23750 98 / 2e-25 Remorin family protein (.1.2) Potri.003G124400 [exp] 101 / 3e-27 AT5G23750 129 / 6e-38 Remorin family protein (.1.2) Potri.001G107000 [exp] 97 / 4e-25 AT5G23750 55 / 2e-09 Remorin family protein (.1.2) Potri.012G140900 [exp] 53 / 2e-09 AT3G48940 78 / 6e-19 Remorin family protein (.1) Potri.006G053200 [exp] 49 / 3e-07 AT3G57540 196 / 2e-61 Remorin family protein (.1) Potri.016G054400 [exp] 48 / 1e-06 AT2G41870 206 / 7e-66 Remorin family protein (.1) Potri.008G178300 [exp] 41 / 0.0002 AT1G67590 306 / 1e-102 Remorin family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03763 [flax] [poplar] Remorin_C Remorin, C-terminal region
Representative CDS sequence Show only first row Show all	>Lus10030379 pacid=23152996 polypeptide=Lus10030379 locus=Lus10030379.g ID=Lus10030379.BGIv1.0 annot-version=v1.0 ATGGCGCAGCAAGTGATGGAGAACGTAGAACCTCAACCACCTCTAGCCGAAGCTCCAGTCCCGGGGCCGTTTCCACCGCCGTCAGCCGTCGACGAGAACA CTAATTTCGTTCCTACTACTCCGGAAGAGGCGACACCAGTACAATCCAAACCTCCGACAGTAGCGGCGGAAGAAGAAAATGTTGCTCTTGCTGAACTTGA TAAGGAGAAGAAGTCTTCCTTTATCAAAGCATGGGAAGACAGTGAGAAAAGTAAAGTGACCAACAAAGCTCAGAAACAGCTGTCTGCTGTAGCTGCATGG GAGAACAGCAAGAAAGCAGCAGCGGAAGCTAAGCTGAAAAAGATAGAGGAGCAACTGGAGAAGGAAAAGGCAGGATACGCAGAGAAGATGAAGAACCAAA TTGCTCAAATCCACAAAGAAGCTGAAGAAAAAAGGGCAATGGTCGAAGCCAAGCGCGGGGAAGAGATTCTGAAAGCCGAAGAAATGGCTGCGAAATATCG CGCCACTGGCCATATCCCGAAGAAGCTTCTTGGTTGCTTCTGA
AA sequence Show only first row Show all	>Lus10030379 pacid=23152996 polypeptide=Lus10030379 locus=Lus10030379.g ID=Lus10030379.BGIv1.0 annot-version=v1.0 MAQQVMENVEPQPPLAEAPVPGPFPPPSAVDENTNFVPTTPEEATPVQSKPPTVAAEEENVALAELDKEKKSSFIKAWEDSEKSKVTNKAQKQLSAVAAW ENSKKAAAEAKLKKIEEQLEKEKAGYAEKMKNQIAQIHKEAEEKRAMVEAKRGEEILKAEEMAAKYRATGHIPKKLLGCF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G61260			Remorin family protein (.1)		Lus10030379 [exp]	0	1
AT4G12690			Plant protein of unknown funct...		Lus10036872 [exp]	1.4	0.9658
AT4G13260		YUC2	YUCCA2, Flavin-binding monooxy...		Lus10011093 [exp]	3.5	0.9378
AT4G12690			Plant protein of unknown funct...		Lus10006223 [exp]	4.5	0.9567
AT3G45780		RPT1, NPH1, JK2...	ROOT PHOTOTROPISM 1, NONPHOTOT...		Lus10036144 [exp]	5.0	0.9344
AT3G45780		RPT1, NPH1, JK2...	ROOT PHOTOTROPISM 1, NONPHOTOT...		Lus10018122 [exp]	6.9	0.9076
AT5G02540			NAD(P)-binding Rossmann-fold s...		Lus10024415 [exp]	7.7	0.9264
AT1G70830		MLP28	MLP-like protein 28 (.1.2.3.4....		Lus10012742 [exp]	10.1	0.9193
AT1G08770		PRA1.E	prenylated RAB acceptor 1.E (....		Lus10018774 [exp]	10.2	0.9230
AT4G31470			CAP (Cysteine-rich secretory p...		Lus10005557 [exp]	12.0	0.9199
AT3G06070			unknown protein		Lus10034044 [exp]	13.0	0.9246

Compare expression of checked genes

Lus10030379 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.