Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037861 [exp] 230 / 1e-78 ND / Lus10037862 [exp] 190 / 6e-63 ND / Lus10028948 [exp] 129 / 1e-38 ND / Lus10002152 [exp] 125 / 4e-37 ND / Lus10007472 [exp] 124 / 7e-37 ND 38 / 0.002 Lus10002730 [exp] 116 / 1e-33 ND / Lus10014737 [exp] 115 / 3e-33 ND / Lus10014735 [exp] 115 / 3e-33 ND / Lus10037860 [exp] 112 / 8e-32 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G158700 [exp] 114 / 1e-32 ND / Potri.002G158600 [exp] 111 / 2e-31 ND / Potri.014G081800 [exp] 110 / 4e-31 ND / Potri.014G082700 [exp] 110 / 5e-31 ND / Potri.014G081900 [exp] 106 / 3e-29 ND / Potri.017G153100 [exp] 106 / 3e-29 ND / Potri.003G126200 [exp] 105 / 6e-29 ND / Potri.019G100100 [exp] 101 / 2e-27 ND / Potri.014G082000 [exp] 99 / 1e-26 ND / Potri.009G009700 [exp] 98 / 3e-26 ND /
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10030380 pacid=23153144 polypeptide=Lus10030380 locus=Lus10030380.g ID=Lus10030380.BGIv1.0 annot-version=v1.0 ATGAACATCAACATTAACCTCATGATCATCCTACAAACTCTCTTCCTCCTCCTTCCGATTCCACTTCTCGCAACATCGGCTCAATCCAAACAAACCTCAC CGAATTCCAACATCACGGTTAGTCTCGCCGAAACCGGTCAAACCCCAGCCATTCTAACCCTCAACGGCTTTGAAAAGGGCGAAGGGGGCGGCGACGCATC CGAATGTGACAGCAGCTACCACAGCGACGACGAGAACATCGTGGCACTGTCCACTCCGTGGTACAACCAAGGGCAGCGGTGCTCCCAATACATCACGATC ACTAGGGCCGACGGCGGCCAAGGTACCACGACGGCGAAGGTGGTCGACGAATGTGACGTGTCGGGCGGTTGTCGGGAAAATATTGTGGATGGGTCAAAGG CTGTTTGGAAAGCCCTTGGTGTGGATGAGAGTGATCCTACTTACGGTGAAATACCGGTTACGTGGGGTATGTGCTAA
AA sequence Show only first row Show all	>Lus10030380 pacid=23153144 polypeptide=Lus10030380 locus=Lus10030380.g ID=Lus10030380.BGIv1.0 annot-version=v1.0 MNININLMIILQTLFLLLPIPLLATSAQSKQTSPNSNITVSLAETGQTPAILTLNGFEKGEGGGDASECDSSYHSDDENIVALSTPWYNQGQRCSQYITI TRADGGQGTTTAKVVDECDVSGGCRENIVDGSKAVWKALGVDESDPTYGEIPVTWGMC

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10030380 [exp]	0	1
AT1G65550			Xanthine/uracil permease famil...		Lus10036355 [exp]	1.0	0.9654
AT2G38290		AMT2;1, ATAMT2	AMMONIUM TRANSPORTER 2;1, ammo...		Lus10024186 [exp]	5.0	0.8704
AT3G03200	NAC	ANAC045	NAC domain containing protein ...		Lus10033650 [exp]	20.4	0.9135
AT5G11420			Protein of unknown function, D...		Lus10025753 [exp]	29.0	0.8798
AT5G20950			Glycosyl hydrolase family prot...		Lus10043457 [exp]	33.7	0.8792
AT2G03350			Protein of unknown function, D...		Lus10036804 [exp]	42.1	0.8686
AT1G64640		AtENODL8	early nodulin-like protein 8 (...		Lus10033227 [exp]	49.0	0.8624
					Lus10037775 [exp]	149.9	0.8069
AT3G63470		SCPL40	serine carboxypeptidase-like 4...		Lus10005327 [exp]	186.5	0.8063
AT1G08590			Leucine-rich receptor-like pro...		Lus10000814 [exp]	189.1	0.7894

Compare expression of checked genes

Lus10030380 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.