Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45850 198 / 8e-61 AT-hook AT hook motif DNA-binding family protein (.1.2) AT3G61310 177 / 9e-53 AT-hook AT hook motif DNA-binding family protein (.1) AT4G12080 165 / 8e-48 AT-hook ATAHL1, AHL1 AT-hook motif nuclear-localized protein 1 (.1) AT2G33620 164 / 1e-47 AT-hook AT hook motif DNA-binding family protein (.1.2.3.4) AT4G22770 154 / 4e-44 AT-hook AT hook motif DNA-binding family protein (.1) AT4G00200 152 / 3e-43 AT-hook AT hook motif DNA-binding family protein (.1) AT5G46640 149 / 1e-41 AT-hook AT hook motif DNA-binding family protein (.1) AT4G25320 147 / 2e-40 AT-hook AT hook motif DNA-binding family protein (.1) AT1G63470 143 / 2e-39 AT-hook AT hook motif DNA-binding family protein (.1) AT5G51590 143 / 3e-39 AT-hook AT hook motif DNA-binding family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037858 [exp] 427 / 2e-150 AT2G45850 278 / 1e-91 AT hook motif DNA-binding family protein (.1.2) Lus10004022 [exp] 166 / 2e-48 AT4G12080 288 / 1e-95 AT-hook motif nuclear-localized protein 1 (.1) Lus10030269 [exp] 166 / 3e-48 AT4G12080 294 / 7e-98 AT-hook motif nuclear-localized protein 1 (.1) Lus10011067 [exp] 160 / 6e-46 AT2G33620 225 / 4e-71 AT hook motif DNA-binding family protein (.1.2.3.4) Lus10008533 [exp] 159 / 2e-45 AT1G63470 292 / 7e-97 AT hook motif DNA-binding family protein (.1) Lus10004318 [exp] 158 / 3e-45 AT4G12080 305 / 3e-102 AT-hook motif nuclear-localized protein 1 (.1) Lus10000315 [exp] 158 / 4e-45 AT2G33620 228 / 4e-72 AT hook motif DNA-binding family protein (.1.2.3.4) Lus10015027 [exp] 155 / 5e-44 AT4G25320 267 / 5e-87 AT hook motif DNA-binding family protein (.1) Lus10008535 [exp] 153 / 2e-43 AT1G63470 296 / 3e-98 AT hook motif DNA-binding family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G082100 [exp] 258 / 2e-84 AT2G45850 229 / 8e-73 AT hook motif DNA-binding family protein (.1.2) Potri.002G158200 [exp] 254 / 7e-83 AT2G45850 219 / 4e-69 AT hook motif DNA-binding family protein (.1.2) Potri.003G126500 [exp] 181 / 3e-54 AT1G63470 296 / 2e-98 AT hook motif DNA-binding family protein (.1) Potri.001G104900 [exp] 179 / 3e-53 AT1G63470 281 / 1e-92 AT hook motif DNA-binding family protein (.1) Potri.014G070000 [exp] 174 / 7e-52 AT4G12080 233 / 2e-74 AT-hook motif nuclear-localized protein 1 (.1) Potri.002G148600 [exp] 173 / 3e-51 AT4G12080 248 / 2e-80 AT-hook motif nuclear-localized protein 1 (.1) Potri.003G090900 [exp] 173 / 9e-51 AT4G17950 216 / 3e-66 AT hook motif DNA-binding family protein (.1) Potri.002G005000 [exp] 171 / 9e-50 AT2G33620 228 / 8e-72 AT hook motif DNA-binding family protein (.1.2.3.4) Potri.001G143500 [exp] 170 / 1e-49 AT4G17950 243 / 9e-77 AT hook motif DNA-binding family protein (.1) Potri.001G115800 [exp] 167 / 4e-49 AT4G12080 248 / 2e-80 AT-hook motif nuclear-localized protein 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0615 [flax] [poplar] ALDC PF03479 [flax] [poplar] PCC Plants and Prokaryotes Conserved (PCC) domain
Representative CDS sequence Show only first row Show all	>Lus10030381 pacid=23153196 polypeptide=Lus10030381 locus=Lus10030381.g ID=Lus10030381.BGIv1.0 annot-version=v1.0 ATGGATCGATCTGGGTCATTCTACGCGCAGAGAGGGATTTCAACAGGTGGTTTGAACATGTCTTCTTCTTCTTCACCAATGGGGGCCGTACAGCAGTTCC AATCAAACATGGTGGTTGGATCTTCATCAGCCGCATTGCCTATGGAGCCGCAGCTTCCTCCCCAACAGCAGCAGCTGGTTGCTGAGGCGGCGGGAGTCAG TGTGATGAAGAGGAAAAGAGGGAGGCCGAGGAAGTATGGACCAGATGGGACAGCTTCATTGGCATTGTCTCCTTCTTCAATATCTTCTTCCTCAACTCAT ACTGGCACCATTACCCCTACTACTACTCAGAAGCGTGGCAGAGGCCGCCCACCTGGCAGTGGCAAGAAGCAGCAGCTCCTCATGGCCTCTTCTTCTTCTC CTCTTGGCATAGGAGACTGGATATCAGGCTCAGCTGGGATTGGTTTCACTCCTCATATCATCACTGTTGCAGTTGGAGAAGACATTGCGACGAAGATAAT GTCCTTCTCGCAGCAAGGGCCGCGAGCTATATGTATATTATCAGCAAATGGAGCAGTCTCTACTGTAACTCTTACTCAACCTTCTACATCTGGAGGCACT GTCACATACGAGGGTCGATTCGAGATATTGTGCCTCTCGGGCTCTTACTTGCTGACTGAGGTTACTAGCTCGCGCAATAGAGCCGGTGGCCTGAGTGTCT CGCTTGCCAGTCCTGATGGTCGCGTCTTTGGAGGCGGAGTTGGAGGGATGCTCATTGCAGCTAGCCCTGTTCAGGTGATTGTGGGGAGCTTCATATGGGG CGGTCCAAAGACGAAGAGCAAGAAAGCGGAAGGGTCAGAAGGCGGTAGAGAATCCGAGCAGCAGCACCACCTGCAGACGATTCATCACGAGAATCCGGTG AGTCCAACGAGCGGAGTTCCTCCTCCTCAGCCTAATCAGAGCCTTGCACCAGAAGGTGGCGCAGGAATGTGGCCTGGTTCGCGGCCACTGGACATGCACC ACAGCCACCACCATGACATTGATTTGATGCGCGGTTAG
AA sequence Show only first row Show all	>Lus10030381 pacid=23153196 polypeptide=Lus10030381 locus=Lus10030381.g ID=Lus10030381.BGIv1.0 annot-version=v1.0 MDRSGSFYAQRGISTGGLNMSSSSSPMGAVQQFQSNMVVGSSSAALPMEPQLPPQQQQLVAEAAGVSVMKRKRGRPRKYGPDGTASLALSPSSISSSSTH TGTITPTTTQKRGRGRPPGSGKKQQLLMASSSSPLGIGDWISGSAGIGFTPHIITVAVGEDIATKIMSFSQQGPRAICILSANGAVSTVTLTQPSTSGGT VTYEGRFEILCLSGSYLLTEVTSSRNRAGGLSVSLASPDGRVFGGGVGGMLIAASPVQVIVGSFIWGGPKTKSKKAEGSEGGRESEQQHHLQTIHHENPV SPTSGVPPPQPNQSLAPEGGAGMWPGSRPLDMHHSHHHDIDLMRG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G45850	AT-hook		AT hook motif DNA-binding fami...		Lus10030381 [exp]	0	1
AT5G65280		GCL1	GCR2-like 1 (.1)		Lus10025736 [exp]	1.0	0.9122
					Lus10016109 [exp]	2.4	0.8989
AT3G17470		ATCRSH	Ca2+-activated RelA/spot homol...		Lus10042894 [exp]	3.0	0.8896
AT5G05730		JDL1, WEI2, TRP...	WEAK ETHYLENE INSENSITIVE 2, T...		Lus10009888 [exp]	3.2	0.8639
AT3G23255			unknown protein		Lus10011825 [exp]	4.0	0.8833
AT3G55850		LAF3 ISF2, LAF3...	LAF3 ISOFORM 2, LONG AFTER FAR...		Lus10016328 [exp]	6.0	0.8653
AT5G55850		NOI	RPM1-interacting protein 4 (RI...		Lus10032112 [exp]	7.0	0.8153
AT5G38600			Proline-rich spliceosome-assoc...		Lus10034080 [exp]	8.1	0.8629
					Lus10035688 [exp]	8.5	0.8777
					Lus10026122 [exp]	9.2	0.8771

Compare expression of checked genes

Lus10030381 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.