Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G00710 770 / 0 BSK3 BR-signaling kinase 3 (.1) AT1G63500 725 / 0 Protein kinase protein with tetratricopeptide repeat domain (.1) AT5G41260 722 / 0 Protein kinase protein with tetratricopeptide repeat domain (.1) AT5G59010 702 / 0 Protein kinase protein with tetratricopeptide repeat domain (.1.2) AT3G54030 684 / 0 Protein kinase protein with tetratricopeptide repeat domain (.1) AT1G01740 660 / 0 Protein kinase protein with tetratricopeptide repeat domain (.1.2) AT4G35230 596 / 0 BSK1 BR-signaling kinase 1 (.1) AT5G46570 579 / 0 BSK2 BR-signaling kinase 2 (.1) AT3G09240 557 / 0 Protein kinase protein with tetratricopeptide repeat domain (.1) AT5G01060 544 / 0 Protein kinase protein with tetratricopeptide repeat domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037856 [exp] 1003 / 0 AT4G00710 764 / 0.0 BR-signaling kinase 3 (.1) Lus10018849 [exp] 776 / 0 AT4G00710 726 / 0.0 BR-signaling kinase 3 (.1) Lus10008530 [exp] 738 / 0 AT1G63500 834 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1) Lus10008494 [exp] 738 / 0 AT1G63500 831 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1) Lus10001998 [exp] 735 / 0 AT1G63500 811 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1) Lus10027743 [exp] 713 / 0 AT3G54030 824 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1) Lus10035550 [exp] 707 / 0 AT3G54030 817 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1) Lus10000806 [exp] 683 / 0 AT4G00710 625 / 0.0 BR-signaling kinase 3 (.1) Lus10040719 [exp] 675 / 0 AT5G59010 820 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G082400 [exp] 826 / 0 AT4G00710 826 / 0.0 BR-signaling kinase 3 (.1) Potri.002G158400 [exp] 822 / 0 AT4G00710 820 / 0.0 BR-signaling kinase 3 (.1) Potri.003G126700 [exp] 742 / 0 AT1G63500 805 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1) Potri.001G104700 [exp] 737 / 0 AT1G63500 791 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1) Potri.006G093900 [exp] 716 / 0 AT3G54030 844 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1) Potri.016G105800 [exp] 703 / 0 AT3G54030 835 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1) Potri.001G246400 [exp] 685 / 0 AT5G59010 868 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1.2) Potri.009G039500 [exp] 684 / 0 AT5G59010 857 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1.2) Potri.009G142800 [exp] 602 / 0 AT4G35230 890 / 0.0 BR-signaling kinase 1 (.1) Potri.004G182800 [exp] 599 / 0 AT4G35230 899 / 0.0 BR-signaling kinase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10030383 pacid=23153157 polypeptide=Lus10030383 locus=Lus10030383.g ID=Lus10030383.BGIv1.0 annot-version=v1.0 ATGGGTGGCCAGTGTTCCACGCTTCTGTGTTGCAGTGATTCGCAGTTCAAAGCAGCAGCGGTTGTTGAAGCTGCTAATTCCGGGGATTTGGTGGAGGAGA ATGGAGTTGACTACTTGCCTGCGTTGAAGGAGTTCACGTTCGAGCAACTGAAGAACGCCACCTCTGGTTTTGCAGTGGAGAACATCGTTTCTGAACATGG AGAGAAAGCTCCTAACGTTGTTTACAAAGGGAAGCTTGAAAACCAGTCCAAAATTGCTGTCAAGCGATTCAATCGAATGGCTTGGCCTGATGCTCGCCAG TTTGTGGAGGAAGCAAGATCCGTTGGCCAGCTCCGTAGCCATACACTGTCCAATTTGGTTGGTTATTGCTGTGAAGGTGACGAAAGGCTACTTGTTGCAG AATTTATGCCTAATGAGACACTAGCAAAGCATCTGTTCCATTGGGAAGCACAGCCTATGAAGTGGGCTATGAGATTAAGGGTTGTTCTGTACTTAGCAGA AGCTCTAGAGTATTGCATTAGCAAAGGACGTACACTGTATCATGATCTTAATGCCTATAGAATTTTGTTTGATGAGGATGCTAATCCAAGACTGTCAACA TTTGGGTTGATGAAGAACAGCAGGGATGGGAAAAGTTACAGTACCAACCTGGCATTCACTCCACCTGAGTATCTGAGAACTGGAAGGATTATGCCAGAGA GTGTGATATATAGCTTTGGCACCCTTTTGCTTGACCTTCTCAGCGGGAAGCATATCCCCCCAAGCCATGCTCTCGACTTGATACGCGACAGGAATCTTCA AATGTTGACTGATTCTTGCTTGGAAGGGCAGTTCTCCAATGATGACGGCACAGAGTTACTGCGGTTGGCTTCTAGATGCTTACAGTCCGAACTCCGAGAG CGACCCAGTCTAAAAGTTTTAATGGCTGCTTTGACACCTCTTCAGAAAGCGGCAGATGTTCCTTCCCATGTATTGATGGGTATGCCAAGCAGTGAATCAG ATTATCCTTTGTCTTCATTTGGCGATGCGTGCTCCACAAAGGATCTAACATCTATACACGAGATCTTAGATAAGCTCGGTTATAAAGATGATGAAGGAGT GACTAACGAGCTCTCTTTCCAGCTATGGACTGACGAAATGCTAGAAACTCTAAACACAAAGAAGCAGGGAGACGCTGCGTTTAGGCAGAAGGATTTTAAG GAAGCAATCGACTTTTATACACAGTTCATTGATGCTGGAACCATGGCTTCCCCGACAGTTCATGTGCGGCGTAGTCTGTCATATCTCATGACCGATAGGC CCCAAGAAGCTCTGAGCGACGCGATGCAGGCGCAAGTCATTTCCCCAGTATGGCACGTTGCTTCGTACCTTCAAGGTGTTGCTCTTTCGGCGCTTGGAAG AGAGAATGAAGCTCAGATGGCACTGAAAGAAGGCACGTGTCTTGAAGCTGAAAGAGTTGAAAATGCTGAAGAGAAGTGA
AA sequence Show only first row Show all	>Lus10030383 pacid=23153157 polypeptide=Lus10030383 locus=Lus10030383.g ID=Lus10030383.BGIv1.0 annot-version=v1.0 MGGQCSTLLCCSDSQFKAAAVVEAANSGDLVEENGVDYLPALKEFTFEQLKNATSGFAVENIVSEHGEKAPNVVYKGKLENQSKIAVKRFNRMAWPDARQ FVEEARSVGQLRSHTLSNLVGYCCEGDERLLVAEFMPNETLAKHLFHWEAQPMKWAMRLRVVLYLAEALEYCISKGRTLYHDLNAYRILFDEDANPRLST FGLMKNSRDGKSYSTNLAFTPPEYLRTGRIMPESVIYSFGTLLLDLLSGKHIPPSHALDLIRDRNLQMLTDSCLEGQFSNDDGTELLRLASRCLQSELRE RPSLKVLMAALTPLQKAADVPSHVLMGMPSSESDYPLSSFGDACSTKDLTSIHEILDKLGYKDDEGVTNELSFQLWTDEMLETLNTKKQGDAAFRQKDFK EAIDFYTQFIDAGTMASPTVHVRRSLSYLMTDRPQEALSDAMQAQVISPVWHVASYLQGVALSALGRENEAQMALKEGTCLEAERVENAEEK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G00710		BSK3	BR-signaling kinase 3 (.1)		Lus10030383 [exp]	0	1
AT5G23960		ATTPS21	terpene synthase 21 (.1.2)		Lus10008611 [exp]	1.0	0.9489
AT1G19440		KCS4	3-ketoacyl-CoA synthase 4 (.1)		Lus10042318 [exp]	2.4	0.9316
AT1G04040			HAD superfamily, subfamily III...		Lus10011774 [exp]	3.5	0.9343
					Lus10017937 [exp]	3.9	0.9138
AT1G20050		HYD1	HYDRA1, C-8,7 sterol isomerase...		Lus10015386 [exp]	7.2	0.9152
AT2G03350			Protein of unknown function, D...		Lus10037126 [exp]	7.2	0.9281
AT5G14020			Endosomal targeting BRO1-like ...		Lus10035167 [exp]	7.4	0.9166
AT5G45550		MOB1-like	MOB1-like, Mob1/phocein family...		Lus10017172 [exp]	8.1	0.8910
AT5G14020			Endosomal targeting BRO1-like ...		Lus10012563 [exp]	8.8	0.9257
AT5G15140			Galactose mutarotase-like supe...		Lus10030673 [exp]	10.2	0.9215

Compare expression of checked genes

Lus10030383 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.