Plant FIBer expression Database

Lus10030384 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G01730 105 / 2e-28 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10037855
[exp]
196 / 3e-65 AT1G01730 74 / 2e-17 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.014G082600
[exp]
129 / 3e-36 AT1G01730 84 / 1e-18 unknown protein
Potri.002G158500
[exp]
125 / 7e-36 AT1G01730 77 / 3e-17 unknown protein
Potri.015G145000
[exp]
69 / 7e-15 AT1G01730 48 / 8e-07 unknown protein
PFAM info
Representative CDS sequence
>Lus10030384 pacid=23153051 polypeptide=Lus10030384 locus=Lus10030384.g ID=Lus10030384.BGIv1.0 annot-version=v1.0
ATGGAGGAAACAGTAGGAGCTCGAGAAGCCTCACCTGCAGAAATCCCGATTCCGTCGGCTGATCCAGCCCCAATCTCAGATCCATTTAATGCAGGCACCG
CCGCCCCTCTGCCTGTTCCAACTGTTCCTCAACCAGCAGCATCAGCACCGCCGCCGCCCCCGCCTCCAAGTTTTTATGCAAACAGTAGGAAGAGAGGCCT
TGACACTGACAGCAGAACACGAAACGGCAACTACCTGAAGATTCGAGCTGTGGTTAGGGATATTCGTCCCCATTTACTCGAGGTTATTCGAACTGCTGAT
TTCAGAAGCTGCAAAGGAGCTCATGAAATTCGAGAAAAGCTGAAGGTGGTGATGGAACTATGCAAACAGTTGACTGCGGAGACCGGCGGGAATGCCAAGT
CTAGATTTGCAGCAGACGGCGAAAATGGTGGGGAGCAAAAGATCGTTGGAGCCTCCGCCTTCGGCTGGAACTTCATTACTTATCCCGACAGTGGCGGCGA
ACCAGTCTACTATGGTAGAACGAAGGAATCGTTTCGAGCTGCTGCATCACTATCTGTCGAAACATCAGGTGTATAA
AA sequence
>Lus10030384 pacid=23153051 polypeptide=Lus10030384 locus=Lus10030384.g ID=Lus10030384.BGIv1.0 annot-version=v1.0
MEETVGAREASPAEIPIPSADPAPISDPFNAGTAAPLPVPTVPQPAASAPPPPPPPSFYANSRKRGLDTDSRTRNGNYLKIRAVVRDIRPHLLEVIRTAD
FRSCKGAHEIREKLKVVMELCKQLTAETGGNAKSRFAADGENGGEQKIVGASAFGWNFITYPDSGGEPVYYGRTKESFRAAASLSVETSGV

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G01730 unknown protein Lus10030384
[exp]
0 1
AT2G27990 HD PNF, BLH8 POUND-FOOLISH, BEL1-like homeo... Lus10016110
[exp]
6.9 0.8649
AT3G50870 GATA GATA18, HAN, MN... MONOPOLE, HANABA TANARU, GATA ... Lus10041746
[exp]
11.0 0.8426
AT3G50870 GATA GATA18, HAN, MN... MONOPOLE, HANABA TANARU, GATA ... Lus10028301
[exp]
13.7 0.8339
AT5G59950 RNA-binding (RRM/RBD/RNP motif... Lus10024413
[exp]
14.0 0.7855
AT4G35020 ROP6, ARAC3, RH... RHO-RELATED PROTEIN FROM PLANT... Lus10033131
[exp]
16.4 0.8450
AT5G57480 P-loop containing nucleoside t... Lus10006967
[exp]
17.1 0.7656
AT3G48970 Heavy metal transport/detoxifi... Lus10039225
[exp]
17.2 0.8583
AT4G00850 GIF3 GRF1-interacting factor 3 (.1) Lus10027132
[exp]
17.7 0.7831
AT2G01630 O-Glycosyl hydrolases family 1... Lus10034607
[exp]
19.0 0.8140
AT2G01710 Chaperone DnaJ-domain superfam... Lus10009275
[exp]
22.2 0.7868

Lus10030384 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.