Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G01710 587 / 0 Acyl-CoA thioesterase family protein (.1) AT4G00520 474 / 1e-166 Acyl-CoA thioesterase family protein (.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037853 [exp] 840 / 0 AT1G01710 626 / 0.0 Acyl-CoA thioesterase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G083300 [exp] 651 / 0 AT1G01710 557 / 0.0 Acyl-CoA thioesterase family protein (.1) Potri.002G159150 [exp] 78 / 2e-17 AT1G01710 72 / 6e-16 Acyl-CoA thioesterase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0050 [flax] [poplar] HotDog PF02551 [flax] [poplar] Acyl_CoA_thio Acyl-CoA thioesterase CL0029 [flax] [poplar] Cupin PF00027 [flax] [poplar] cNMP_binding Cyclic nucleotide-binding domain
Representative CDS sequence Show only first row Show all	>Lus10030385 pacid=23153048 polypeptide=Lus10030385 locus=Lus10030385.g ID=Lus10030385.BGIv1.0 annot-version=v1.0 ATGGAGTTCCTAGGTTGCGTGCCTTTGCTGCAGCGGTTGCCGAGTTCCTCACTGAAGAAAATAGCTCAGCTCGTCACTGCTCGACATTTTGATAAAGGAC AGTATGTGATGCGCGAGGGTGAAGTCGGTGAAGGTGTTTATTTCATATGGGAAGGGGAGGCTGAAGTGGGTGGATCAGTGCATTCCGAGGAGGAAAATCG CCCTGAGTTTCAATTGAAACGATTCGATTACTTTGGCAATGGTGTCTCAGTACAGCAAGTAGATGTGATTGCTTTAACCAATCTGACCTGCTTAGTGCTG CTCCGTGAACATTGCAGCTTGCTGCAGACGAAATCAATATGGAGAGCAGATGAGACTAGTGATTCATGCTCCCTTGTGGAACGTATACTGCAATTAGATT CAGTAGAAGTGAATCTATTCCATGGAATAACTTTGCCAGAAGCCCCCAAGTTCGGGAAGGTTTTTGGAGGTCAGTTTGTTGGCCAGGCACTTGCTGCAGC ATCAAAAACTGTGGATTGCCTAAAGATTATACACAGTTTGCACTCTTATTTCCTTCTTGTTGGTGATTTTAACATGCCAATTCTTTACCAAGTTCACCGC ATCCGTGACGGGAAAAGCTTTGCTACCCGTAGAGTTGATGCTATACAAAAGGGAAATGTTATGTTCACGTTGATTGCATCATTTCAGAAAGAAGAAACAG GTTTCGACCACCAGGCAGTAACAATGCCATCTGTACCAGATCCGGAGATGCTCTTGTCATTGGAACAGCTGCGTGACAAGCGCTTAACAGACCCTCGTAT TCCAAGAAGCTACAGAAACAAAGTAGCTGCTAAAGAATTTATCCCTTGGCCAATAGAGATACGGTTCTGTGAGCCTAGTACCCGCACCAACCAGACAAAG TCTCCTTCGAGCTTGAAGTACTGGTTCAGAGCCAAAGGAAAGCTTTCGGATGATCAAGCTTTGCATAGATGTGTAGCAGCATATACTTCAGATCTCATCT TTCTTCAAGTTAGCTTGAACCCTCATCGCCATAGGGGTTTGAAGGCATCTGCTGTTAGTCTTGATCACTCGATGTGGTTCCATCGACCTTTCAGAGCTGA TGACTGGGTATTATTTGTGATTGATAGTCCGGCTGCATCCAATGCGCGCGGGTTCGTATCTGGAGCTATGTTCACTAAAAAGGGAGAGCACATCGTGTCG GTAACCCAAGAGGGTCTTCTTCGGAAGCTTAAGGTGCCGAATCAAGCCGCTGTTTCGAAGTTGTAA
AA sequence Show only first row Show all	>Lus10030385 pacid=23153048 polypeptide=Lus10030385 locus=Lus10030385.g ID=Lus10030385.BGIv1.0 annot-version=v1.0 MEFLGCVPLLQRLPSSSLKKIAQLVTARHFDKGQYVMREGEVGEGVYFIWEGEAEVGGSVHSEEENRPEFQLKRFDYFGNGVSVQQVDVIALTNLTCLVL LREHCSLLQTKSIWRADETSDSCSLVERILQLDSVEVNLFHGITLPEAPKFGKVFGGQFVGQALAAASKTVDCLKIIHSLHSYFLLVGDFNMPILYQVHR IRDGKSFATRRVDAIQKGNVMFTLIASFQKEETGFDHQAVTMPSVPDPEMLLSLEQLRDKRLTDPRIPRSYRNKVAAKEFIPWPIEIRFCEPSTRTNQTK SPSSLKYWFRAKGKLSDDQALHRCVAAYTSDLIFLQVSLNPHRHRGLKASAVSLDHSMWFHRPFRADDWVLFVIDSPAASNARGFVSGAMFTKKGEHIVS VTQEGLLRKLKVPNQAAVSKL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G01710			Acyl-CoA thioesterase family p...		Lus10030385 [exp]	0	1
AT3G10540			3-phosphoinositide-dependent p...		Lus10028834 [exp]	3.0	0.8228
AT1G67960		POD1	POLLEN DEFECTIVE IN GUIDANCE 1...		Lus10015372 [exp]	3.5	0.8132
AT1G55320		AAE18	acyl-activating enzyme 18 (.1....		Lus10012931 [exp]	12.5	0.8197
AT2G25870			haloacid dehalogenase-like hyd...		Lus10038133 [exp]	14.7	0.8035
AT2G26280		CID7	CTC-interacting domain 7 (.1)		Lus10009796 [exp]	16.3	0.8176
AT5G01510		RUS5	ROOT UV-B SENSITIVE 5, Protein...		Lus10027788 [exp]	16.7	0.8115
AT1G66730		AtLIG6	DNA LIGASE 6 (.1)		Lus10017623 [exp]	22.1	0.7911
AT4G01370		ATMPK4	MAP kinase 4 (.1)		Lus10017518 [exp]	28.2	0.7428
AT5G58870		FTSH9	FTSH protease 9 (.1)		Lus10040695 [exp]	28.3	0.7889
AT4G38960	CO		B-box type zinc finger family ...		Lus10018076 [exp]	28.6	0.7268

Compare expression of checked genes

Lus10030385 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.