Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G00525 80 / 2e-19 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037852 [exp] 257 / 4e-89 AT4G00525 85 / 2e-21 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G159100 [exp] 107 / 6e-30 AT4G00525 105 / 9e-30 unknown protein Potri.014G083100 [exp] 103 / 2e-28 AT4G00525 99 / 5e-27 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10030386 pacid=23153155 polypeptide=Lus10030386 locus=Lus10030386.g ID=Lus10030386.BGIv1.0 annot-version=v1.0 ATGGCACTGAACTGTCCGCCGGAGGGAGCCCCAAACTCCGACGCCGGCGTCAGTCATGGATCGGGAGGAGCCGAGCCGGAATTCGAAGAGGTTATGATAG AGGAAGGAGAGTTGGATGAGTTGGCGGAGGAAGTACAACAGATGGCGAAGAAGATTCAAGAGTACAGAGTTACTCTCCCCGACCAGCTCAAGACGACTCT AGCTTCACTTCTCTCTTCCCAGAGGCTTCCCATGCCTGAAATCGATTCCGCCGCCGAGGCCTCTGCTCCAGAGTCGAGGCAGGTTAAGTCGAGCACCGGA GCATTACGAAGCGAAGAAGAAGATCAACAAACTCGCAAGAAATTAAAGTTGCTGAAAGATAAAGTAGCTAAGAATGCTTCAAATATGCCAACGGTTATAA AGAGGATGAAAGACTGTATCTCCAAGATTGACACATTAGAGTCGTCGTCTTCCAAGCCAGACATACATCCTGCTTTCAGAATGAAAAAGGGATAG
AA sequence Show only first row Show all	>Lus10030386 pacid=23153155 polypeptide=Lus10030386 locus=Lus10030386.g ID=Lus10030386.BGIv1.0 annot-version=v1.0 MALNCPPEGAPNSDAGVSHGSGGAEPEFEEVMIEEGELDELAEEVQQMAKKIQEYRVTLPDQLKTTLASLLSSQRLPMPEIDSAAEASAPESRQVKSSTG ALRSEEEDQQTRKKLKLLKDKVAKNASNMPTVIKRMKDCISKIDTLESSSSKPDIHPAFRMKKG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G00525			unknown protein		Lus10030386 [exp]	0	1
AT3G18165		MOS4	modifier of snc1,4 (.1)		Lus10018001 [exp]	1.4	0.9057
AT3G18165		MOS4	modifier of snc1,4 (.1)		Lus10041997 [exp]	2.0	0.8580
AT1G08390			unknown protein		Lus10038152 [exp]	3.2	0.8198
AT1G68550	AP2_ERF	CRF10	cytokinin response factor 10, ...		Lus10034316 [exp]	5.3	0.8537
AT3G03750		SUVR3, SDG20	SET domain protein 20 (.1.2)		Lus10003864 [exp]	5.7	0.7913
AT1G56590		ZIP4	ZIG SUPPRESSOR 4, Clathrin ada...		Lus10031432 [exp]	8.1	0.8195
AT2G41430		LSR1, CID1, ERD...	CTC-Interacting Domain 1, dehy...		Lus10009847 [exp]	10.7	0.8419
AT2G45520			unknown protein		Lus10009304 [exp]	10.9	0.8101
AT5G56550		ATOXS3	oxidative stress 3 (.1)		Lus10034985 [exp]	11.0	0.8558
					Lus10018814 [exp]	12.5	0.8143

Compare expression of checked genes

Lus10030386 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.