Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G58760 303 / 5e-99 Integrin-linked protein kinase family (.1) AT4G18950 290 / 4e-94 Integrin-linked protein kinase family (.1) AT1G14000 286 / 1e-92 VIK VH1-interacting kinase (.1) AT2G43850 264 / 1e-83 Integrin-linked protein kinase family (.1.2) AT3G59830 263 / 3e-83 Integrin-linked protein kinase family (.1) AT2G31800 256 / 8e-81 Integrin-linked protein kinase family (.1) AT2G17700 171 / 9e-48 STY8 serine/threonine/tyrosine kinase 8, ACT-like protein tyrosine kinase family protein (.1) AT1G67890 172 / 4e-47 PAS domain-containing protein tyrosine kinase family protein (.1.2) AT5G49470 164 / 1e-45 PAS domain-containing protein tyrosine kinase family protein (.1.2.3.4) AT3G06640 165 / 9e-45 PAS domain-containing protein tyrosine kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037851 [exp] 763 / 0 AT3G58760 305 / 2e-99 Integrin-linked protein kinase family (.1) Lus10029277 [exp] 283 / 4e-91 AT4G18950 601 / 0.0 Integrin-linked protein kinase family (.1) Lus10030435 [exp] 280 / 2e-90 AT1G14000 748 / 0.0 VH1-interacting kinase (.1) Lus10026626 [exp] 278 / 7e-90 AT1G14000 748 / 0.0 VH1-interacting kinase (.1) Lus10008350 [exp] 230 / 1e-69 AT2G31800 753 / 0.0 Integrin-linked protein kinase family (.1) Lus10004066 [exp] 203 / 3e-61 AT1G14000 174 / 6e-50 VH1-interacting kinase (.1) Lus10027107 [exp] 207 / 1e-60 AT2G31800 709 / 0.0 Integrin-linked protein kinase family (.1) Lus10023989 [exp] 169 / 9e-47 AT4G38470 771 / 0.0 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) Lus10012517 [exp] 168 / 3e-46 AT4G35780 754 / 0.0 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G158950 [exp] 621 / 0 AT4G18950 305 / 1e-99 Integrin-linked protein kinase family (.1) Potri.004G064400 [exp] 289 / 9e-94 AT4G18950 632 / 0.0 Integrin-linked protein kinase family (.1) Potri.010G164500 [exp] 278 / 1e-89 AT1G14000 757 / 0.0 VH1-interacting kinase (.1) Potri.008G090800 [exp] 277 / 3e-89 AT1G14000 743 / 0.0 VH1-interacting kinase (.1) Potri.017G123100 [exp] 269 / 1e-86 AT4G18950 235 / 5e-73 Integrin-linked protein kinase family (.1) Potri.017G007800 [exp] 259 / 4e-82 AT2G31800 751 / 0.0 Integrin-linked protein kinase family (.1) Potri.007G142100 [exp] 257 / 8e-81 AT2G43850 726 / 0.0 Integrin-linked protein kinase family (.1.2) Potri.005G106200 [exp] 175 / 5e-49 AT4G35780 821 / 0.0 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1) Potri.002G015400 [exp] 168 / 9e-47 AT4G38470 650 / 0.0 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) Potri.007G060600 [exp] 167 / 3e-46 AT4G35780 793 / 0.0 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0465 [flax] [poplar] Ank PF00023 [flax] [poplar] Ank Ankyrin repeat CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10030387 pacid=23152986 polypeptide=Lus10030387 locus=Lus10030387.g ID=Lus10030387.BGIv1.0 annot-version=v1.0 ATGGACGACGGCGACGAAGCTGTTTCTTCTTCGTCGAAGAAGATAAGCCGAGTTGACTCGGAAAGTCCGTACAGGCTGCTTCACTGCTCGGGTAAAGGCG ACAGAGCCGGAGTGATGCAGGAATTGAACAACGGTGTCCCGCCAAATCTTTCCGATTACGATAAGCGGACAGCTCTTCATTTGGCCTCCTCTGAAGGCCG TGCCGGAATCGTGCGCCTACTTCTTGAGAAAGGCGCTAATGTTAATTCTCTTGATCGATGGGGTCGTACTCCATTGTCTGATGCTCGGAGCTTTGGTCAT ATGGACATTTGCAAGGTACTTGAATCTGGAGGCGGCATCGATCCGGTCGGACGTGATTCACAAACGCCATGCTATGAGATTCACGTCAGTGAAGTGGACA TGCACAATGCAACGCTCATCGGAGAAGGAACATATGGGGAGGTTTACTTAGTGAAATGGCGTGGTACTGAAGTGGCTGCAAAGACCATACGCTCTTCCAT TGCTTCAAATCCGAGTGTGAAGTCAACCTTTATCAAGGAATTGGGTTTGTGGCAAAAGTTGAGGCACCCAAATATAGTGCAGTTTTTAGGTGTTCTGACG CACTCTGATCGCTTGATCTTTCTGACGGAGTATCTTCGGAATGGAAGTTTGTACGACATATTGAGAAAGAAGGGAAGACTTGATCCACCGACCGCTGTTG CTTATGCTTTAGATATTGCAAGGGGTATGAATTATCTACATCGACACAAACCACATGCCATAATACATCGAGATTTGACGCCAAGGAACGTGTTAGTAGA TGAGTCAGGGCATCTCAAAGTCACGGATTTTGGCTTAAGCAAGATTGGAGAACAAAAGGATGCTTATGGTTACAAAATGACAGGAGGAACTGGCTCATAT CGTTACATGGCCCCAGAGGTTTATCGCCGAGAATCCTATGGGAAGAGTGTTGATGTATTCTCTTTTTCTCTGATCTTTCATGAGTTGTTTCTAGGAGGAC CTTCGAATGCAACAGAACTTCCAGAGCAAGTTGCAGACAAACGGGCATATGAAGATGCTAGACCATCCCTGTCTTCGTTTGTATACCCTGACGCAATTAA GAGGCTTCTTCGAGATTGTTGGCACAGCAACCCAGAATGTCGACCAACATTCGAAGAGATAATTGTACAACTAGAAGTGATCCAAGAGGGTTTGCGGAGA CAGAGAGCTGAAGGTTCCTGTCAATGCTTCATCTTATGA
AA sequence Show only first row Show all	>Lus10030387 pacid=23152986 polypeptide=Lus10030387 locus=Lus10030387.g ID=Lus10030387.BGIv1.0 annot-version=v1.0 MDDGDEAVSSSSKKISRVDSESPYRLLHCSGKGDRAGVMQELNNGVPPNLSDYDKRTALHLASSEGRAGIVRLLLEKGANVNSLDRWGRTPLSDARSFGH MDICKVLESGGGIDPVGRDSQTPCYEIHVSEVDMHNATLIGEGTYGEVYLVKWRGTEVAAKTIRSSIASNPSVKSTFIKELGLWQKLRHPNIVQFLGVLT HSDRLIFLTEYLRNGSLYDILRKKGRLDPPTAVAYALDIARGMNYLHRHKPHAIIHRDLTPRNVLVDESGHLKVTDFGLSKIGEQKDAYGYKMTGGTGSY RYMAPEVYRRESYGKSVDVFSFSLIFHELFLGGPSNATELPEQVADKRAYEDARPSLSSFVYPDAIKRLLRDCWHSNPECRPTFEEIIVQLEVIQEGLRR QRAEGSCQCFIL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G58760			Integrin-linked protein kinase...		Lus10030387 [exp]	0	1
AT4G28365		AtENODL3	early nodulin-like protein 3 (...		Lus10039852 [exp]	16.0	0.7571
AT5G44940			F-box/RNI-like superfamily pro...		Lus10000726 [exp]	23.8	0.7568
AT1G02335		GL22	germin-like protein subfamily ...		Lus10023350 [exp]	29.2	0.7568
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10036927 [exp]	34.1	0.7564
AT5G61850	LFY	LFY3, LFY	LEAFY 3, floral meristem ident...		Lus10016732 [exp]	36.7	0.7505
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10010759 [exp]	39.6	0.7492
AT1G78955		CAMS1	camelliol C synthase 1 (.1)		Lus10026079 [exp]	44.0	0.7414
AT1G37140		MCT1	MEI2 C-terminal RRM only like ...		Lus10018195 [exp]	49.1	0.7383
					Lus10010377 [exp]	50.5	0.5804
AT3G52610			unknown protein		Lus10022698 [exp]	56.8	0.7314

Compare expression of checked genes

Lus10030387 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.