Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G20960 422 / 6e-147 Cytidine/deoxycytidylate deaminase family protein (.1) AT3G47390 114 / 2e-27 PHS1 PHOTOSENSITIVE 1, cytidine/deoxycytidylate deaminase family protein (.1.2) AT1G68720 48 / 1e-05 ATTADA, TADA ARABIDOPSIS THALIANA TRNA ADENOSINE DEAMINASE A, tRNA arginine adenosine deaminase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037850 [exp] 715 / 0 AT4G20960 430 / 1e-149 Cytidine/deoxycytidylate deaminase family protein (.1) Lus10026832 [exp] 111 / 1e-26 AT3G47390 876 / 0.0 PHOTOSENSITIVE 1, cytidine/deoxycytidylate deaminase family protein (.1.2) Lus10020208 [exp] 108 / 1e-25 AT3G47390 885 / 0.0 PHOTOSENSITIVE 1, cytidine/deoxycytidylate deaminase family protein (.1.2) Lus10041104 [exp] 101 / 4e-23 AT3G47390 791 / 0.0 PHOTOSENSITIVE 1, cytidine/deoxycytidylate deaminase family protein (.1.2) Lus10036431 [exp] 98 / 7e-22 AT3G47390 870 / 0.0 PHOTOSENSITIVE 1, cytidine/deoxycytidylate deaminase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G158800 [exp] 469 / 4e-165 AT4G20960 422 / 6e-146 Cytidine/deoxycytidylate deaminase family protein (.1) Potri.014G083000 [exp] 278 / 1e-93 AT4G20960 272 / 6e-91 Cytidine/deoxycytidylate deaminase family protein (.1) Potri.019G054000 [exp] 107 / 3e-25 AT3G47390 935 / 0.0 PHOTOSENSITIVE 1, cytidine/deoxycytidylate deaminase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0109 [flax] [poplar] CDA PF00383 [flax] [poplar] dCMP_cyt_deam_1 Cytidine and deoxycytidylate deaminase zinc-binding region
Representative CDS sequence Show only first row Show all	>Lus10030388 pacid=23153129 polypeptide=Lus10030388 locus=Lus10030388.g ID=Lus10030388.BGIv1.0 annot-version=v1.0 ATGGCCAGCTCACCTCGCTTGAGAAGAATAACCGGTGAGTTGAATCTGAAGTGTCGATGGGATCTGGTTGAAGGACATAGTGGAGGCAAAGATGATGGGT ATTACATTAGGAGGTGTGTGGAGATCGCTAGGAAGGCGATTGGGAGGACAAGCCCCAATCCAATGGTGGGCTGTGTGATTGTCAAGGATGGTGAAATCGT CGGAGAAGGTTACCATCCTAAAGCCGGCCAGCCTCATGCTGAGGTATTTGCTCTTAGAGATGCTGGAGCGTTGGCTGAGAATGCTACAGCTTACGTGAGC TTGGAGCCTTGCAATCACTATGGAAGAACTCCACCATGCACTGAAGCTCTTATCAATGCCAAAGTAAAGAAGGTGGTGGTTGGGATGGTTGATCCAAACC CAATTGTGGCTTCTAAAGGAGTGGTAAAATTGAGAGGTGCTGGGATAGATGTAACAGTTGGTGTGAAGGAAGAACTCTGCTGGCGACTCAATGAGTCCTA TATCCATAAGATGCTGACAGGGAAACCTTTCGTCACAATTAGATATTCTATATCTCTGAACGGCAACGTTATGAACCAAATCGGAAGAGGAGTCATGGAA ACCGGGGGCTACTACTCCCGATTGTTGCAGGAATACGACGTGGTTGTTCTTTCCGCTTCTTCAACCGAGCATATGTCCCTTCCAGTTTCACAGGAACCTG GTGCTAGTCAACCCCTTTGGATAATAATAGCAAACTCTCCTTCTCCAGTCCATATATCACCTCTGGGCGAAGATTCTAAAGTGATTATCTTTGCAGAGAA AGAATCCACCGCTGGACCTGGTATTAGTCATAAAGGAATTGAAACTGTGGTACTGGATCAGATGAATCTGGATGCTGTTCTGGAGTACTGTAACCAGCAG GGTCTGTGTAGTGTCCTTCTGGATTTGAGGGGTAGTTTTGGGATTCGAAAGCTTGTTGAGGACGGTATGGAGCAAGGCTCGGTGCAGAAGATTGTTGTCG AAGTACTTCCTGTTTGGAATGGAAATAGCGACGAATCCGATTCTCTTGCTGAATTGAAGACCGTGTCAAAACACATAGAGCTGAAGAATTTACAGGCCAA TAGTTCCAGTGGAAGCATCGTACTAGAGGGTTACCTTTAG
AA sequence Show only first row Show all	>Lus10030388 pacid=23153129 polypeptide=Lus10030388 locus=Lus10030388.g ID=Lus10030388.BGIv1.0 annot-version=v1.0 MASSPRLRRITGELNLKCRWDLVEGHSGGKDDGYYIRRCVEIARKAIGRTSPNPMVGCVIVKDGEIVGEGYHPKAGQPHAEVFALRDAGALAENATAYVS LEPCNHYGRTPPCTEALINAKVKKVVVGMVDPNPIVASKGVVKLRGAGIDVTVGVKEELCWRLNESYIHKMLTGKPFVTIRYSISLNGNVMNQIGRGVME TGGYYSRLLQEYDVVVLSASSTEHMSLPVSQEPGASQPLWIIIANSPSPVHISPLGEDSKVIIFAEKESTAGPGISHKGIETVVLDQMNLDAVLEYCNQQ GLCSVLLDLRGSFGIRKLVEDGMEQGSVQKIVVEVLPVWNGNSDESDSLAELKTVSKHIELKNLQANSSSGSIVLEGYL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G20960			Cytidine/deoxycytidylate deami...		Lus10030388 [exp]	0	1
AT4G00740		QUA3	QUASIMODO 3, S-adenosyl-L-meth...		Lus10041363 [exp]	15.0	0.7350
AT2G36390		SBE2.1, BE3	BRANCHING ENZYME 3, starch bra...		Lus10012264 [exp]	15.9	0.7265
AT5G17710		EMB1241	embryo defective 1241, Co-chap...		Lus10028034 [exp]	21.2	0.7235
AT4G01220		MGP4	male gametophyte defective 4, ...		Lus10008735 [exp]	22.2	0.7147
AT4G23900			Nucleoside diphosphate kinase ...		Lus10003878 [exp]	26.7	0.7055
AT1G22450		ATCOX6B2, COX6B	CYTOCHROME C OXIDASE 6B2, cyto...		Lus10008716 [exp]	31.7	0.6656
AT3G02630			Plant stearoyl-acyl-carrier-pr...		Lus10039241 [exp]	33.9	0.6998
AT3G02580		BUL1, DWF7, STE...	DWARF 7, BOULE 1, sterol 1 (.1...		Lus10028498 [exp]	34.1	0.7153
AT3G57400			unknown protein		Lus10042067 [exp]	40.5	0.6951
AT5G55960			unknown protein		Lus10022565 [exp]	41.1	0.6949

Compare expression of checked genes

Lus10030388 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.