Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G61320 447 / 3e-156 Bestrophin-like protein (.1) AT2G45870 439 / 3e-153 Bestrophin-like protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037849 [exp] 650 / 0 AT3G61320 495 / 2e-175 Bestrophin-like protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G082900 [exp] 515 / 0 AT3G61320 455 / 3e-159 Bestrophin-like protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01062 [flax] [poplar] Bestrophin Bestrophin, RFP-TM, chloride channel
Representative CDS sequence Show only first row Show all	>Lus10030389 pacid=23153086 polypeptide=Lus10030389 locus=Lus10030389.g ID=Lus10030389.BGIv1.0 annot-version=v1.0 ATGTCCCGCCAAATCAATTCCCACTCCTCACTCCCCAATTTCTCCCTCTCCTCCTCCGATTACCTCATCCGGCTCCGCCACAACCACCCCCACCGCCACC TCTCCTTCAAACCTCTATCTTCTTCCAACTCCCCGCCGCCGGAAAACCACAGCCCTTCCAAATCCCTAATCTCCCTCCTCCGCGTAATCCCCGACTGGTC CGACCGGATCAAGGAGCGCGGCATGCGCAAAACCCGCACCCTCTACAACCACGACAAATGGATCGAGCACCGTAGCTCCCTCCGCCACGTCCGCCACCTC CTCTCCAGCTTGTCCTCGCGCGTCATCCTCTCGTTGATTCCGCCTGTAATCGCCTTCACTCTTGTCGCCGTAGTCGTCGCCGGTTACAACACCGCCGTGG AGCTCCATTCCTTGCCTGCGTTTTTCCCCGTCCTCAGGGCTTCCACGCTGCCGTATCAGCTCACTGCTCCCGCTTTGGCGCTGCTGCTTGTGTTCAGGAC GGAGGCTTCTTACTCTAGGTTTGAAGAAGGGAGGAAAGCCTGGACTAAGGTCATTTCCGGGACGAATGAATTCGCTAGGCAGATCATTACTGGTGTTGAT GAGTCCAGAGATTCTATACTTAAGAGTGCGCTTTTGAAGTATGTTATGGCCTTCCCCATCGCGCTTAAGTGCCATGTGATCAATGGTTCAGACGTTCGAC AAGATCTCAAGAATGTGTTGGAAGTAGATGATCTTGCACTGGTGATGGATTCTAGGCATCGACCTCGCTGCATCATCGCGTTGATTTCGCAAAGCCTTAG ACTACTGAGCCTGGAAGAAACCAAGAGAAATCTGCTGGAGGCCAAGCTTTCTTGTTTCCATGAGGGACTTGATGTATGTGAAGAGCTTATAGGCATTCCC ATTCCGCTTTCGTATACTCGCCTAACGTCAAGATTTCTAGTCCTTTGGCATCTCACCCTTCCTATAATCCTTTGGGAGGATTGCCATTGGATTGTTGTCC CCGCTACGTTCATCAGTGCTGCTTCCTTGTTCTGCATCGAGGAGGTCGGTGTTCTTATCGAGGAACCATTTCCAATGTTGGCTCTTGACGCTCTCTGCAA TCTAGTTTGCCAAAACGTTGAGGAAGCCGTTGCATCGGACAAAGACATTCAAGCGCATCTTATCTCGAAAAGGAAGAGTCATTCACTTGAGCACTCATCA ACAAACGGTTGGCCTAAATCTTGA
AA sequence Show only first row Show all	>Lus10030389 pacid=23153086 polypeptide=Lus10030389 locus=Lus10030389.g ID=Lus10030389.BGIv1.0 annot-version=v1.0 MSRQINSHSSLPNFSLSSSDYLIRLRHNHPHRHLSFKPLSSSNSPPPENHSPSKSLISLLRVIPDWSDRIKERGMRKTRTLYNHDKWIEHRSSLRHVRHL LSSLSSRVILSLIPPVIAFTLVAVVVAGYNTAVELHSLPAFFPVLRASTLPYQLTAPALALLLVFRTEASYSRFEEGRKAWTKVISGTNEFARQIITGVD ESRDSILKSALLKYVMAFPIALKCHVINGSDVRQDLKNVLEVDDLALVMDSRHRPRCIIALISQSLRLLSLEETKRNLLEAKLSCFHEGLDVCEELIGIP IPLSYTRLTSRFLVLWHLTLPIILWEDCHWIVVPATFISAASLFCIEEVGVLIEEPFPMLALDALCNLVCQNVEEAVASDKDIQAHLISKRKSHSLEHSS TNGWPKS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G61320			Bestrophin-like protein (.1)		Lus10030389 [exp]	0	1
AT4G27360			Dynein light chain type 1 fami...		Lus10038566 [exp]	3.0	0.9086
AT2G37240			Thioredoxin superfamily protei...		Lus10014017 [exp]	5.2	0.9174
AT3G16520		UGT88A1	UDP-glucosyl transferase 88A1 ...		Lus10039301 [exp]	7.4	0.8979
AT1G77090			Mog1/PsbP/DUF1795-like photosy...		Lus10018931 [exp]	8.0	0.9144
AT5G52450			MATE efflux family protein (.1...		Lus10029668 [exp]	9.2	0.8997
AT2G21970		SEP2	stress enhanced protein 2 (.1)		Lus10035846 [exp]	11.8	0.8893
AT4G36930	bHLH	SPT, bHLH024	SPATULA, basic helix-loop-heli...		Lus10009261 [exp]	12.5	0.8857
AT1G21065			unknown protein		Lus10016049 [exp]	13.8	0.8870
AT5G67370			Protein of unknown function (D...		Lus10011087 [exp]	15.7	0.8900
AT3G60690			SAUR-like auxin-responsive pro...		Lus10015879 [exp]	16.4	0.8804

Compare expression of checked genes

Lus10030389 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.