Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G15570 229 / 5e-71 Phototropic-responsive NPH3 family protein (.1) AT1G52770 208 / 6e-63 Phototropic-responsive NPH3 family protein (.1) AT5G64330 135 / 1e-34 JK218, RPT3, NPH3 ROOT PHOTOTROPISM 3, NON-PHOTOTROPIC HYPOCOTYL 3, Phototropic-responsive NPH3 family protein (.1.2) AT5G13600 130 / 4e-33 Phototropic-responsive NPH3 family protein (.1) AT1G30440 128 / 3e-32 Phototropic-responsive NPH3 family protein (.1) AT5G03250 127 / 6e-32 Phototropic-responsive NPH3 family protein (.1) AT4G37590 122 / 2e-30 MEL1, NPY5 NAKED PINS IN YUC MUTANTS 5, MAB4/ENP/NPY1-LIKE 1, Phototropic-responsive NPH3 family protein (.1) AT1G03010 120 / 1e-29 Phototropic-responsive NPH3 family protein (.1) AT5G48800 120 / 1e-29 Phototropic-responsive NPH3 family protein (.1) AT2G23050 117 / 1e-28 MEL4, NPY4 NAKED PINS IN YUC MUTANTS 4, MAB4/ENP/NPY1-LIKE 4, Phototropic-responsive NPH3 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037848 [exp] 462 / 5e-163 AT3G15570 343 / 1e-115 Phototropic-responsive NPH3 family protein (.1) Lus10023274 [exp] 140 / 1e-36 AT1G30440 910 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10038531 [exp] 139 / 8e-36 AT1G30440 915 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10040409 [exp] 136 / 7e-35 AT5G03250 667 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10009292 [exp] 132 / 9e-34 AT5G03250 670 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10013799 [exp] 132 / 1e-33 AT5G03250 672 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10023523 [exp] 130 / 7e-33 AT5G03250 667 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10015871 [exp] 129 / 2e-32 AT5G03250 666 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10026511 [exp] 126 / 2e-31 AT5G03250 665 / 0.0 Phototropic-responsive NPH3 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G058800 [exp] 234 / 6e-73 AT3G15570 499 / 1e-175 Phototropic-responsive NPH3 family protein (.1) Potri.001G175400 [exp] 227 / 2e-70 AT1G52770 507 / 8e-179 Phototropic-responsive NPH3 family protein (.1) Potri.010G223600 [exp] 139 / 3e-36 AT5G03250 683 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.008G038600 [exp] 135 / 6e-35 AT5G03250 723 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.007G112600 [exp] 134 / 2e-34 AT5G64330 989 / 0.0 ROOT PHOTOTROPISM 3, NON-PHOTOTROPIC HYPOCOTYL 3, Phototropic-responsive NPH3 family protein (.1.2) Potri.011G091100 [exp] 132 / 7e-34 AT1G30440 924 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.001G357100 [exp] 131 / 2e-33 AT1G30440 971 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.017G048200 [exp] 129 / 1e-32 AT5G64330 993 / 0.0 ROOT PHOTOTROPISM 3, NON-PHOTOTROPIC HYPOCOTYL 3, Phototropic-responsive NPH3 family protein (.1.2) Potri.016G090400 [exp] 128 / 2e-32 AT5G03250 768 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.005G146400 [exp] 127 / 4e-32 AT2G14820 671 / 0.0 NAKED PINS IN YUC MUTANTS 2, MAB4/ENP/NPY1-LIKE 3, Phototropic-responsive NPH3 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03000 [flax] [poplar] NPH3 NPH3 family
Representative CDS sequence Show only first row Show all	>Lus10030390 pacid=23153171 polypeptide=Lus10030390 locus=Lus10030390.g ID=Lus10030390.BGIv1.0 annot-version=v1.0 ATGAACAAAACATCCGCCGACCACCACCACCTGCCGCCGACCACCGCAAGCATCTGGTTCGACGACGCCTGCATCCTCGACATGGACTACTTCGTCAAGA CCATAACCGGAATCAAATCCAAAGGCGTCCGGCCCGACCTCATCGGCTCAATCATCGCTCATTACGCCTCCAAATGGCTCCCTGAACTCTCACCCGACAA CAACACCGCCGCCGCCGCCGCCGAAAAAGGCTGCGGAGAAAACATGACTACTGTGCTCGTCGTGGAGCACGTGACTCCGGTGGGTAAGTTATTTGGCGGT AGGAAGGCGGCGGCGGAGGCGGCGGGGAAGGTGGGGAAGCTGGTGGATGGGTACCTGGCGGAGGTGGCGGTGGATTCGAATCTGGGGCTTTTGGAGTTTG TGTCTCTTGCTGCTGCGGTTCCTCACCATGGCCGTACGATCGACGATGGGCTCTACCGTTCTATCAATACTTATCTCAAAGCACATCCAGGGGTGTCAAA GCAAGAGAAGAAGAGCCTATGCAGGCTAATAGACAGCAGGAAGCTCTCACCAGAGGCATCCTTCCACGCTTCCCACAACGAAAGGCTACCGGTTCGAGTC GTGATCCAAGTCCTCTTCGCCGAGCAAACCAAGCTCACAAGGCAACTCGACTGGAGCAGCGGCTCCTTCAACAACGACCTAAACCTCATGACTCGTTCGA GCCCCAACCCTCGATCTTACAACAACAACAACATGGACCATCAAGTCACATCCACTCGATGCCACTCGAAGCGGGAGCTGAACGCCCAGCATTCGGAGAT CAGGAAGCTGAAGGAAGACGTGGTGAGGCTGCAGAGCCAGTGCCTTAGCATGCAGAACCAGATGGGGAGGATGATGGCTGATCAGAAGAAGAAAAACAAT GGTGGCCATGTGTTTAGCTACTGGAAGAAGTTAGGGTTCTCATCAACAACTTTCAAAACTAATTCAGGTGATCAGAAGGTGGTTGATCAATTTAATGAAG GAAGATCATCAGATCATCATGGAGGAGAAGTTGTTATGGGAAAGGAAACTCCAGTTGTTGATAATATCAAGGCTAAACTTGTCAAGAAGAGGACTCCTCC TCATAGGTGGAGAATATCCATGTCTTTAGATTATTGTACGTACTATAATATATATAATTAA
AA sequence Show only first row Show all	>Lus10030390 pacid=23153171 polypeptide=Lus10030390 locus=Lus10030390.g ID=Lus10030390.BGIv1.0 annot-version=v1.0 MNKTSADHHHLPPTTASIWFDDACILDMDYFVKTITGIKSKGVRPDLIGSIIAHYASKWLPELSPDNNTAAAAAEKGCGENMTTVLVVEHVTPVGKLFGG RKAAAEAAGKVGKLVDGYLAEVAVDSNLGLLEFVSLAAAVPHHGRTIDDGLYRSINTYLKAHPGVSKQEKKSLCRLIDSRKLSPEASFHASHNERLPVRV VIQVLFAEQTKLTRQLDWSSGSFNNDLNLMTRSSPNPRSYNNNNMDHQVTSTRCHSKRELNAQHSEIRKLKEDVVRLQSQCLSMQNQMGRMMADQKKKNN GGHVFSYWKKLGFSSTTFKTNSGDQKVVDQFNEGRSSDHHGGEVVMGKETPVVDNIKAKLVKKRTPPHRWRISMSLDYCTYYNIYN

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G15570			Phototropic-responsive NPH3 fa...		Lus10030390 [exp]	0	1
AT1G12950		RSH2	root hair specific 2 (.1)		Lus10036853 [exp]	2.0	0.8585
AT3G24140	bHLH	bHLH097, FMA	FAMA, basic helix-loop-helix (...		Lus10007139 [exp]	2.2	0.8974
AT2G37010		ATNAP12	non-intrinsic ABC protein 12 (...		Lus10023199 [exp]	5.8	0.8682
					Lus10040159 [exp]	9.5	0.8494
					Lus10035046 [exp]	10.2	0.8584
AT2G37240			Thioredoxin superfamily protei...		Lus10030907 [exp]	10.4	0.8587
AT4G38840			SAUR-like auxin-responsive pro...		Lus10009621 [exp]	12.0	0.8489
AT3G07680			emp24/gp25L/p24 family/GOLD fa...		Lus10006360 [exp]	13.0	0.8495
AT4G00110		GAE3	UDP-D-glucuronate 4-epimerase ...		Lus10031127 [exp]	13.4	0.8353
					Lus10026928 [exp]	15.0	0.8480

Compare expression of checked genes

Lus10030390 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.