Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G00500 523 / 0 alpha/beta-Hydrolases superfamily protein (.1.2) AT3G49050 494 / 1e-173 alpha/beta-Hydrolases superfamily protein (.1) AT5G37710 373 / 9e-127 alpha/beta-Hydrolases superfamily protein (.1) AT2G42450 80 / 5e-16 alpha/beta-Hydrolases superfamily protein (.1) AT3G14075 74 / 8e-14 Mono-/di-acylglycerol lipase, N-terminal;Lipase, class 3 (.1.2) AT4G16070 71 / 7e-13 Mono-/di-acylglycerol lipase, N-terminal;Lipase, class 3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037847 [exp] 713 / 0 AT4G00500 636 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10039240 [exp] 481 / 2e-169 AT3G49050 624 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10027485 [exp] 478 / 7e-168 AT3G49050 616 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10000445 [exp] 200 / 2e-61 AT5G37710 385 / 1e-133 alpha/beta-Hydrolases superfamily protein (.1) Lus10010983 [exp] 199 / 6e-61 AT5G37710 384 / 3e-133 alpha/beta-Hydrolases superfamily protein (.1) Lus10000444 [exp] 150 / 4e-44 AT5G37710 191 / 5e-60 alpha/beta-Hydrolases superfamily protein (.1) Lus10005809 [exp] 82 / 3e-18 AT5G37710 144 / 1e-41 alpha/beta-Hydrolases superfamily protein (.1) Lus10013158 [exp] 81 / 5e-16 AT3G14075 754 / 0.0 Mono-/di-acylglycerol lipase, N-terminal;Lipase, class 3 (.1.2) Lus10008121 [exp] 81 / 5e-16 AT3G14075 763 / 0.0 Mono-/di-acylglycerol lipase, N-terminal;Lipase, class 3 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G083600 [exp] 565 / 0 AT4G00500 629 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.002G159200 [exp] 555 / 0 AT4G00500 619 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.012G142700 [exp] 516 / 0 AT3G49050 654 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.015G145900 [exp] 488 / 4e-172 AT3G49050 631 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.017G130000 [exp] 395 / 2e-135 AT5G37710 609 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.004G086900 [exp] 391 / 1e-133 AT5G37710 599 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.005G222000 [exp] 82 / 1e-16 AT2G42450 643 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.003G067900 [exp] 79 / 2e-15 AT3G14075 752 / 0.0 Mono-/di-acylglycerol lipase, N-terminal;Lipase, class 3 (.1.2) Potri.008G211200 [exp] 67 / 1e-11 AT4G16070 751 / 0.0 Mono-/di-acylglycerol lipase, N-terminal;Lipase, class 3 (.1.2) Potri.010G005800 [exp] 65 / 5e-11 AT4G16070 715 / 0.0 Mono-/di-acylglycerol lipase, N-terminal;Lipase, class 3 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF03893 [flax] [poplar] Lipase3_N Lipase 3 N-terminal region CL0028 [flax] [poplar] AB_hydrolase PF01764 [flax] [poplar] Lipase_3 Lipase (class 3)
Representative CDS sequence Show only first row Show all	>Lus10030391 pacid=23153074 polypeptide=Lus10030391 locus=Lus10030391.g ID=Lus10030391.BGIv1.0 annot-version=v1.0 ATGTCAATCGCCTGTTGCATTCCGGTTGTTGAATGCGTCTACTGCCTCGCCTGCGTACGCTGGGCATGGCGAAGGTGCATCTACACAGCAGGCTACGAAA GCCAGAACTGGGGGCTAGCTACTGTCGAAGAGTTCGATCCAGTCCCACGCCTATGTCGAATCATACTCGCAAACTACGAGGACGATCTTTGTAACCCCGT TTGGGAGCCTCCGGGAGGCTACGGTCTCGATCCGGATTGCTTGATGTTAAAGAAGAGTCATGAACACACGGGTGGCCGATCGAGTCCTTACTTGATCTAC ATCGATCACAGGAATGCTGATGTTGTGTTGGCTATTAGAGGGCTTAATTTGGGTACTGAGAGTGATTATGCTGTCTTGCTTGATAACAAGCTTGGACAGA CTAAGTTCTGCGGAGGGTATGTCCATAACGGTCTTTTAAAGGCTGCGAAATGGGTTTTTGATACGGAATGTGAGGTTTTAAGAGAGTTGCTGGAGCAGAA TCCGGATTATCAGTTGACGTTTGCTGGACATTCGTTAGGTGCCGGGATAGTTGCGTTGTTGACGATATATGCTCTTCAGAATCGAGATAAGTTGGGGAAT ATTGAAAGGAAGAGGATCAGGTGCTTTGCCATGGCTCCTCCTAGGTGCATGTCTTTGAACTTGGCTGTCAGATATGGTGATGTTATCAACTCTGTCGTGC TTCAGGATGATTTTCTACCTCGTACAACCATGGCTTTGGAAGACGTCTTTAAGTCGCTTATCTGGATGGGAAGATATCCTCCAATTGTCCGGACAGCAGT TCCAGTGGACGGGAGGTTCGAGCACATTGTTCTGTCTTGCAATGCAACTGCTGACCATGCCATTATCTGGATAGAAAGGGAATCTCAGAGAGCTCTTGAT ATAATGCTCTCGAATGACCGGATGACAGAGATCCCAGTAGAGCAGCGAATGGAGAGGAAGGAGTCTTTAGCACGAGAACAAACACAGGAATACGAAGCAG CTCTGCAACGAGCCGTTGCTTTAGACATCCCTATTGCATCGGCTTCTCCATATGGGACATTTGCCGATACAGAAGAAGGAGAAACCTCCGGCGGAAGCTC ATCGGGGCCTGCTACTTCGTCGTCGTGGTCGTTCAGGAAAATGAAGGATAGACTCGATAGTTTCGTCGACCGTTTCTTTGATGTCGATGACTCTGGCCAC ATGGTGTTTAAGAACTCAGTCTCGTAA
AA sequence Show only first row Show all	>Lus10030391 pacid=23153074 polypeptide=Lus10030391 locus=Lus10030391.g ID=Lus10030391.BGIv1.0 annot-version=v1.0 MSIACCIPVVECVYCLACVRWAWRRCIYTAGYESQNWGLATVEEFDPVPRLCRIILANYEDDLCNPVWEPPGGYGLDPDCLMLKKSHEHTGGRSSPYLIY IDHRNADVVLAIRGLNLGTESDYAVLLDNKLGQTKFCGGYVHNGLLKAAKWVFDTECEVLRELLEQNPDYQLTFAGHSLGAGIVALLTIYALQNRDKLGN IERKRIRCFAMAPPRCMSLNLAVRYGDVINSVVLQDDFLPRTTMALEDVFKSLIWMGRYPPIVRTAVPVDGRFEHIVLSCNATADHAIIWIERESQRALD IMLSNDRMTEIPVEQRMERKESLAREQTQEYEAALQRAVALDIPIASASPYGTFADTEEGETSGGSSSGPATSSSWSFRKMKDRLDSFVDRFFDVDDSGH MVFKNSVS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G49050			alpha/beta-Hydrolases superfam...		Lus10030391 [exp]	0	1
AT5G58620	C3HZnF		zinc finger (CCCH-type) family...		Lus10018243 [exp]	13.3	0.9348
AT1G53050			Protein kinase superfamily pro...		Lus10018601 [exp]	20.4	0.9347
AT1G72390			unknown protein		Lus10013170 [exp]	20.6	0.9238
AT1G60680		AGD2	NAD(P)-linked oxidoreductase s...		Lus10004399 [exp]	30.3	0.9307
AT3G15518			unknown protein		Lus10043096 [exp]	32.2	0.9247
AT4G24690		AtNBR1	Arabidopsis thaliana next to B...		Lus10017950 [exp]	33.2	0.9286
AT2G45360			Protein of unknown function (D...		Lus10032203 [exp]	39.4	0.8892
AT2G40600			appr-1-p processing enzyme fam...		Lus10029040 [exp]	40.1	0.9259
AT3G48890		MSBP2, ATMP2, A...	MEMBRANE STEROID BINDING PROTE...		Lus10005746 [exp]	67.8	0.8904
AT4G14746			unknown protein		Lus10039368 [exp]	69.2	0.9132

Compare expression of checked genes

Lus10030391 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.