Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G00490 660 / 0 BAM2, BMY9 BETA-AMYLASE 9, beta-amylase 2 (.1) AT2G45880 584 / 0 BZR BAM7, BMY4 BETA-AMYLASE 4, beta-amylase 7 (.1) AT5G45300 479 / 7e-163 BZR BAM8, BMY2 BETA-AMYLASE 8, beta-amylase 2 (.1.2) AT2G32290 398 / 1e-132 BAM6, BMY5 BETA-AMYLASE 5, beta-amylase 6 (.1) AT4G15210 383 / 7e-128 BAM5, AT-BETA-AMY, BMY1, RAM1, ATBETA-AMY REDUCED BETA AMYLASE 1, ARABIDOPSIS THALIANA BETA-AMYLASE, beta-amylase 5 (.1.2) AT4G17090 366 / 1e-120 CT-BMY, BMY8, BAM3 BETA-AMYLASE 8, BETA-AMYLASE 3, chloroplast beta-amylase (.1) AT3G23920 351 / 2e-114 BAM1, BMY7, TR-BAMY BETA-AMYLASE 7, beta-amylase 1 (.1) AT5G55700 287 / 2e-90 BAM4, BMY6 BETA-AMYLASE 6, beta-amylase 4 (.1.2) AT5G18670 198 / 1e-56 BAM9, BMY3 BETA-AMYLASE 9, beta-amylase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037846 [exp] 954 / 0 AT4G00490 684 / 0.0 BETA-AMYLASE 9, beta-amylase 2 (.1) Lus10018842 [exp] 571 / 0 AT2G45880 879 / 0.0 BETA-AMYLASE 4, beta-amylase 7 (.1) Lus10035679 [exp] 490 / 2e-166 AT5G45300 884 / 0.0 BETA-AMYLASE 8, beta-amylase 2 (.1.2) Lus10017820 [exp] 474 / 1e-163 AT2G45880 551 / 0.0 BETA-AMYLASE 4, beta-amylase 7 (.1) Lus10018491 [exp] 395 / 8e-132 AT4G15210 697 / 0.0 REDUCED BETA AMYLASE 1, ARABIDOPSIS THALIANA BETA-AMYLASE, beta-amylase 5 (.1.2) Lus10039701 [exp] 392 / 1e-129 AT4G15210 724 / 0.0 REDUCED BETA AMYLASE 1, ARABIDOPSIS THALIANA BETA-AMYLASE, beta-amylase 5 (.1.2) Lus10039702 [exp] 379 / 5e-126 AT4G15210 694 / 0.0 REDUCED BETA AMYLASE 1, ARABIDOPSIS THALIANA BETA-AMYLASE, beta-amylase 5 (.1.2) Lus10011035 [exp] 354 / 6e-116 AT4G17090 778 / 0.0 BETA-AMYLASE 8, BETA-AMYLASE 3, chloroplast beta-amylase (.1) Lus10001087 [exp] 349 / 6e-114 AT4G17090 781 / 0.0 BETA-AMYLASE 8, BETA-AMYLASE 3, chloroplast beta-amylase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G083800 [exp] 751 / 0 AT4G00490 799 / 0.0 BETA-AMYLASE 9, beta-amylase 2 (.1) Potri.014G083700 [exp] 634 / 0 AT2G45880 863 / 0.0 BETA-AMYLASE 4, beta-amylase 7 (.1) Potri.002G159300 [exp] 618 / 0 AT2G45880 858 / 0.0 BETA-AMYLASE 4, beta-amylase 7 (.1) Potri.003G106500 [exp] 502 / 4e-172 AT5G45300 831 / 0.0 BETA-AMYLASE 8, beta-amylase 2 (.1.2) Potri.017G040800 [exp] 385 / 2e-127 AT4G15210 764 / 0.0 REDUCED BETA AMYLASE 1, ARABIDOPSIS THALIANA BETA-AMYLASE, beta-amylase 5 (.1.2) Potri.001G148900 [exp] 365 / 2e-120 AT4G17090 885 / 0.0 BETA-AMYLASE 8, BETA-AMYLASE 3, chloroplast beta-amylase (.1) Potri.010G062900 [exp] 360 / 5e-118 AT3G23920 908 / 0.0 BETA-AMYLASE 7, beta-amylase 1 (.1) Potri.008G174100 [exp] 356 / 2e-116 AT3G23920 876 / 0.0 BETA-AMYLASE 7, beta-amylase 1 (.1) Potri.003G085500 [exp] 351 / 9e-115 AT4G17090 868 / 0.0 BETA-AMYLASE 8, BETA-AMYLASE 3, chloroplast beta-amylase (.1) Potri.003G143500 [exp] 279 / 1e-86 AT3G23920 442 / 4e-149 BETA-AMYLASE 7, beta-amylase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF01373 [flax] [poplar] Glyco_hydro_14 Glycosyl hydrolase family 14
Representative CDS sequence Show only first row Show all	>Lus10030392 pacid=23153180 polypeptide=Lus10030392 locus=Lus10030392.g ID=Lus10030392.BGIv1.0 annot-version=v1.0 ATGCCGATCTCCGCTGGCCATGTTGCCGACGGCTTTAGGTCTTGCGACGTAGCTTCTGCTGGACTGACGCCGCGGTCGCCTTTTGTTTCTCCATCTCGTG GTTCACTGTCACAATCGAACAGCTGGCTGCGTTTGGATCACAATGACGGCCGTTTGGTGTTCGATGGTCGGCCCCGGAAGTCTGCTGTTGTGATCAGCAG CGGGAAGATTATTGGCGATCATCCGTCTGTTGACGAGTCTGCCGACGAGCAGGTTGTAGAAGTTCGTCCAAAAGTACCGGAGCGTGACTTTACTGGCACA GCCTATGTTCCCGTATACGTTATGTTACCTCTTACAGTTTGTGTCACGTACTTTTTGGGGTTGGGATGCTGGGCCTGGCAGCTCAATGTTATAGACATGA ATTGCCAGTTGATTGATCTTGACGGCCTTACAAACTATCTGAAGATCTTGAAATCAGCTGGTGTTGATGGAGTTATGGTGGATTGCTGGTGGGGAATAGT GGAAGGCGATGCTCCACAGGTGTACAACTGGAGTGGCTATAAGGAACTCTTTAAGACTGTGCGTGACCTCAAGCTTAAGCTGCAGGCTGTGATGTCGTTT TTAATGAATGTGGTGGTAATGTTGGGGACGAACGTATTTGTTCCTCTTCCTCGTTGGGTGATAGAAATTGGTGAAACCAATTCTGACATATATTTCACGG ATAGAGGAGGAAGGCGCAATAATGAGTGCCTCACATGGGGTCTTGACAAGGAACGGGTTTTAAAAAGCAGAACTGCTCTTGAGGTTTATTTCGACTACAT GAGGAGCTTTAGGGTAGAGTGTGATGAATTCTTTCAAGATGGAATAATCTCTGAAATTGAAGTGGGATTGGGTCCATGTGGAGAGTTGCGCTATCCTTCA TATCCAGCAAAGCATGGTTGGAGATATCCTGGCATTGGTGAATTTCAGCAGAAAATCAGGGGACACTCATTTTGGGGAGGAGCTCCAGAGAATGCAGGCT CTTATAATTCTCCACCCCATGAAACTGGTTTCTTTCGTGATGGGGGTGAGTTCGATGGCCACTATGGTAGATTCTTCTTGAATTGGTATTCTCGAGTCTT GATAGATCATGGAGATAGCGTACTTGCCCTCGCTAATTTGGCTTTCGAAGGCACTAAAATTTCAGCAAAGTTATCAGGTATACATTGGTGGTACAAAACT GCTAGTCATGCTGCCGAACTAACTGCTGGATTCTACAACCCATCAAACCGTGATGGATACGCCCCAATCGCAACAATGTTAAAGGAGCATGGTGTCACTC TGAACTTCACTTGTTTTGAGATGCGCACACTGGATCAGTTTGAGGGATTTCCCGAGGCAATGGCGGATCCTGAGGGACTAGTTTGGCAGGTACTGAATGC TGCATGGGATGTATCCTTGCCTGTTGCCAGTGAGAATGCTCTTCCATGCTACGACAGAGAAGGCTACAACAAGATATTAGAAAACGCAAAGCCACTGCAT GATCCAGACTGTAGGCATTTATCAGCATTCACTTATCTCAGGCACAGCTCAGCTCTTATCGAGAGGTGCAACTTCGAAGAATTCGGACGATTTGTTAAGA GAATGCATGGTATGCAGTCCCTTTTCTTTCCCTATTAG
AA sequence Show only first row Show all	>Lus10030392 pacid=23153180 polypeptide=Lus10030392 locus=Lus10030392.g ID=Lus10030392.BGIv1.0 annot-version=v1.0 MPISAGHVADGFRSCDVASAGLTPRSPFVSPSRGSLSQSNSWLRLDHNDGRLVFDGRPRKSAVVISSGKIIGDHPSVDESADEQVVEVRPKVPERDFTGT AYVPVYVMLPLTVCVTYFLGLGCWAWQLNVIDMNCQLIDLDGLTNYLKILKSAGVDGVMVDCWWGIVEGDAPQVYNWSGYKELFKTVRDLKLKLQAVMSF LMNVVVMLGTNVFVPLPRWVIEIGETNSDIYFTDRGGRRNNECLTWGLDKERVLKSRTALEVYFDYMRSFRVECDEFFQDGIISEIEVGLGPCGELRYPS YPAKHGWRYPGIGEFQQKIRGHSFWGGAPENAGSYNSPPHETGFFRDGGEFDGHYGRFFLNWYSRVLIDHGDSVLALANLAFEGTKISAKLSGIHWWYKT ASHAAELTAGFYNPSNRDGYAPIATMLKEHGVTLNFTCFEMRTLDQFEGFPEAMADPEGLVWQVLNAAWDVSLPVASENALPCYDREGYNKILENAKPLH DPDCRHLSAFTYLRHSSALIERCNFEEFGRFVKRMHGMQSLFFPY

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G00490		BAM2, BMY9	BETA-AMYLASE 9, beta-amylase 2...		Lus10030392 [exp]	0	1
AT5G37590			Tetratricopeptide repeat (TPR)...		Lus10004036 [exp]	3.9	0.7746
AT5G39940			FAD/NAD(P)-binding oxidoreduct...		Lus10001121 [exp]	6.2	0.8210
AT2G45730			eukaryotic initiation factor 3...		Lus10034521 [exp]	7.0	0.7948
AT5G61460		SMC6B, ATRAD18,...	STRUCTURAL MAINTENANCE OF CHRO...		Lus10027219 [exp]	7.3	0.8215
AT3G20650			mRNA capping enzyme family pro...		Lus10027333 [exp]	7.5	0.8136
AT1G02145		EBS4, ALG12	EMS-MUTAGENIZED BRI1\(BRASSINO...		Lus10019399 [exp]	11.1	0.8134
AT2G47020			Peptide chain release factor 1...		Lus10038039 [exp]	15.0	0.7130
AT1G80150			Tetratricopeptide repeat (TPR)...		Lus10032338 [exp]	19.4	0.7757
AT1G52630			O-fucosyltransferase family pr...		Lus10026792 [exp]	24.9	0.7619
AT3G61415		ASK21	SKP1-like 21 (.1.2)		Lus10036365 [exp]	25.0	0.7799

Compare expression of checked genes

Lus10030392 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.