Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G11130 1479 / 0 Clathrin, heavy chain (.1) AT3G08530 1471 / 0 Clathrin, heavy chain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037845 [exp] 2784 / 0 AT3G08530 1395 / 0.0 Clathrin, heavy chain (.1) Lus10028976 [exp] 2623 / 0 AT3G08530 1258 / 0.0 Clathrin, heavy chain (.1) Lus10007499 [exp] 2389 / 0 AT3G08530 1152 / 0.0 Clathrin, heavy chain (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G070600 [exp] 1480 / 0 AT3G11130 3139 / 0.0 Clathrin, heavy chain (.1) Potri.010G186900 [exp] 1476 / 0 AT3G11130 3104 / 0.0 Clathrin, heavy chain (.1) Potri.009G073300 [exp] 1431 / 0 AT3G11130 3006 / 0.0 Clathrin, heavy chain (.1) Potri.001G278800 [exp] 1422 / 0 AT3G11130 2982 / 0.0 Clathrin, heavy chain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01394 [flax] [poplar] Clathrin_propel Clathrin propeller repeat CL0020 [flax] [poplar] TPR PF00637 [flax] [poplar] Clathrin Region in Clathrin and VPS CL0020 [flax] [poplar] TPR PF09268 [flax] [poplar] Clathrin-link Clathrin, heavy-chain linker
Representative CDS sequence Show only first row Show all	>Lus10030393 pacid=23152961 polypeptide=Lus10030393 locus=Lus10030393.g ID=Lus10030393.BGIv1.0 annot-version=v1.0 ATGGCGGCAGCTAACGCACCGATCGCCATGAAAGAAGTGCTGACGTTACCTAGCATTGGGATTAGTCCGCAGTTCATCACCTTTACGAACGTGACTATGG AGTCTGACAAGTACATATGTGTGCGAGAAACTGCCCCACAAAATAGTGTTGTTATTGTCGATATGAATATGCCAATGCAACCATTGAGGCGGCCAATCAC GGCAGACTCTGCTCTTATGAATCCGAACTCTAGGATTCTTGCATTGAAAGCTCAACTCCCTGGCACCACTCAGGATCACTTGCAGATATTTAATATTGAG CTGAAAACAAAAATGAAATCGTATCAGATGCCTGAGCAGATTGTCTTCTGGAAATGGATAACGCAGAAAATGTTGGGGCTTGTTACACAGTCGTCTGTTT ATCATTGGTCTATTGAAGGTGATTCGGAACCTGTTAAGATGTTTGAGAGAACAGCTAATTTGGTGAACAATCAGATAATAAATTATCGATGTGATCCCTC TGAGAAGTGGTTAGTGTTGATAGGAATTGCTCCAGGGTCGCCCGAGAGGCAACAACTTGTGAAAGGGAACATGCAACTTTTCTCAGTAGAGCAGCAGCGC AGCCAAGCTCTTGAAGCTCATGCAGCGTCATTTGCTCAATTAAAGGTTCCAGGAAATGAGAATCCTTCTACGCTCATTTCTTTTGCCACAAAGACCTTCA ATGCTGGGCAGGTTACATCAAAGTTGCATGTCATTGAACTTGGTGCTCAACCAGGGAAACCATCATTTACTAAGAAGCAGGCAGATCTTTTCTTTCCTCC AGATTTTGCTGATGACTTTCCTGTAGCGATGCAGATATCCCACAAGTACAACTTGATATTTGTCATCACAAAGCTGGGTTTGTTGTTTGTTTACGACTTG GAGACAGCTGCTGCTGTCTACCGAAACCGGATCAGTCCAGATCCAATATTTTTGACTTCTGAGGCATCTTCTGTGGGGGGATTTTATGCCATCAATAGAC GAGGCCAGGTGTTGCTGGCTACTATAAACGAAGCAACCATTGTATCATTCGTCAGTGAACAATTGAATAATTTAGAGCTTGCTGTTAATCTTGCCAAAAG AGGAAACCTACCTGGTGCAGAGAATCTGGTTGTGCAGCGCTTCCAAGAACTCTTTGCTCAGACAAAATACAAAGAAGCTGCCGAGCTCGCTGCAGAATCT CCGCAGGGAATCCTCCGAACACCAGATACAGTTGCCAAGTTTCAGAGTGTTCCTGTACAAGCTGGACAAACTCCTCCACTGTTACAGTACTTTGGCACTC TTCTGACGCGAGGAAAGCTTAATGCATTTGAATCATTGGAACTGTCACGCCTTGTTGTGAATCAGAACAAAAAGAACCTTTTGGAGAATTGGTTGGCCGA GGATAAGTTGGAATGCAGTGAAGAACTGGGTGACCTCGTAAAGGTCGGGTATACTCCAGACTATTTGTTCCTTCTGCAAACAATCCTCCGCACAGATCCT CAGGGAGCTGTTAATTTTGCTTTGATGATGTCTCAAATGGAAGGGGGGTGTCCGGTCGACTACAATACCATTACTGATCTATTTCTTCAGAGGAACCTAA TTCGCGAAGCGACAGCTTTCCTATTGGATGTTTTGAAGCCAAATTTGCCAGAGCATGCTTTTCTCCAAACAAAGGTCTTGGAAATCAATTTGGTCACATT TCCTAACGTTGCTGATGCCATTTTGGCTAATGGAATGTTCAGCCACTACGATCGTCCTCGTATTGCTCAACTTTGTGAAAAAGCTGGGCTTTATATTCGT GCTTTACAGCATTATGCTGAGTTGCCAGATATTAAACGTGTCATTGTGAACACACATGCAATAGAGCCGCAGTGCTTGACTGTCAATTCCAATTATGCTC TTATTCACCCATGCAGTGAGGATCCTGAAATTCACTTCAAGTATATCGAAGCAGCTGCCAAAACCGGACAAATAAAGGAGGTGGAGCGTGTCACTAGAGA ATCAAATTTCTATGATGCCGAGAAGACTAAGAATTTTCTTATGGAGGTCAAGCTTCCTGATGCAAGGCCACTGATCAATGTTTGTGACCGCTTTGGTTTT GTTGGGGATCTCACTCATTATTTGTACACAAATAATATGCTCCGCTACATTGAAGGTTATGTTCAGAAGGTAAATCCAGGAAATGCTCCATTGGTTGTCG GACAGCTGTTGGATGATGAATGCCCTGAAGATTTCATAAAGGGGCTTATCCTCTCTGTCCGTTCTTTGTTGCCTGTCGAACCCCTTGTTGATGAATGTGA GAAGAGAAATCGGCTTCGTTTGCTCACCCAGTTCCTTGAGCATCTTGTGAGCGAGGGCAGTCAAGATGTGCATGTTCACAATGCGCTTGCAATTAAGGCG GATCCCTCTAGAGTTATGGATTACATTAACAGATTGGATAACTTTGATGGACCTGCTGTTGGAGAAGTGGCAGTTGAAGCCCAGCTTTACGAAGAAGCAT TCGCGATTTTCAAGAAGTTCAATTTGAATGTTCAGGCTGTGAATGTTCTCTTGGATAACATTAGGAGCATCGATCGGGCTGTGGAGTTTGCATTCCGTGT TGAAGAAGATGCTGTGTGGAGCCAAGTGGCCAAGGCTCAACTTCGAGAGGGCCTGGTTAGTGAGGCTATTGAATCATTTATCCGTGCGGATGACGCCACC CAATTTCATGAGGTCATTCGTGCAGCTGAAGAAGCTGAGGTCTATCATGATCTGGTGAAATACCTTCTAATGGTTAGGCAAAAAACGAAAGAGCCCAAGG TGGACAGTGAGCTCATTTTTGCATATGCGAAGATTGATAGGTTAGGTGAAATCGAGGAATTCATTCTTATGCCCAATGTGGCTAATCTTCAACTTGTTGG TGATCGCCTATTTGATGACGCTTTATATGAGGCTGCGAAAATAATATTTGCCTTCATATCAAACTGGGCAAAATTGGCTGTTACACTTGTGCGGCTGAAA CAGTTTCAAGGGGCTGTTGATGCTGCACGGAAGGCCAACAGTGCAAAGACGTGGAAAGAAGTGTGCTTTGCTTGTGTTGACGCGGAAGAGTTCCGATTAG CTCAAATGTGTGGTCTGAATATCATTGTCCAGGTGGATGATCTTGAAGAGGTCAGCGAATTTTATCAAAATAGAGGATATTTCAATGAGTTGATATCTCT GATGGAGAGTGGCTTGGGGTTGGAGCGTGCGCATATGGGAATTTTCACAGAGTTGGGAGTTCTTTATGCCAGATACCGGTATGAGAAACTCATGGAACAC ATCAAACTGTTCTCAACCCGGCTCAACATTCCCAAGCTTATTCGTGCATGTGATGAGCAGCAGCATTGGAAGGAACTCACTTATCTGTACATTCAGTATG ATGAGTTTGACAATGCTGCTACAACTGTTATGAATCATTCTCCTGAGGCATGGGATCACATGCAATTCAAGGATATTGTAGTGAAGGTTGCCAATGTGGA ATTATACTATAAGGCTGTGCATTTCTACTTGCAAGAACATCCTGATCTCATCAATGATGTCCTGAATGTGTTGGCACTCCGTGTTGATCATACTCGTGTT GTTGACATTATGCGCAAGGCTGGCCACTTGCTTCTCGTGAAACCGTATATGGTTGCAGTTCAGAGCAATAATGTAGCTGCTGTCAATGAAGCTTTGAATC AGATATATGTTGAGGAGGAGGACTATGATAGATTACGGGAGTCAATCGATTTGCATGATAACTTTGATCAAATTGGCCTTGCTCAGAAGATTGAGAAGCA TGAGCTGCTTGAAATGAGACGAGTTGCAGCTTACATTTACAAGAAGGCTGGCAGATGGAAGCAGTCAATTGCATTGTCAAAGAAAGATAACCTATACAAA GATGCGATGGAGACTGCATCGCAGTCCGGTGATCGAGAAGTTGCTGAGGAATTGCTGGTTTATTTCATAGAAAAGGTGAAGGCAACAGGCGCTGGGAAGA AGGAATGTTTTGCGTCATGCCTCTTTGTCTGTTACGATCTGATTCGCCCAGACATAGCTCTTGAGCTTGCCTGGATGAATAATATGATCGACTTTGCGTT CCCATACCTGTTACAGTTCATTCGTGAATACACAGGCAAAGTTGATGAGCTTGTGAAAGATAAGCTTGAGGCTCAAAAGGAAGTCAAGGTTAAGGAACAG GAAGAGAAAGACGTGATTGCTCAGCAGAATATGTATGCCCAATTGCTTCCTCTTGCTTTGCCCGCACCTCCGATGCCCGGGATGGGTGGAGGACCTGGAA TGGGTGGGGGTTTCATGCCGCCAATGGGCGGAATGGGAATGCCTCCTATGCCACAGTATGGGATGCCTCCCATGGGCGGAAATTATTGA
AA sequence Show only first row Show all	>Lus10030393 pacid=23152961 polypeptide=Lus10030393 locus=Lus10030393.g ID=Lus10030393.BGIv1.0 annot-version=v1.0 MAAANAPIAMKEVLTLPSIGISPQFITFTNVTMESDKYICVRETAPQNSVVIVDMNMPMQPLRRPITADSALMNPNSRILALKAQLPGTTQDHLQIFNIE LKTKMKSYQMPEQIVFWKWITQKMLGLVTQSSVYHWSIEGDSEPVKMFERTANLVNNQIINYRCDPSEKWLVLIGIAPGSPERQQLVKGNMQLFSVEQQR SQALEAHAASFAQLKVPGNENPSTLISFATKTFNAGQVTSKLHVIELGAQPGKPSFTKKQADLFFPPDFADDFPVAMQISHKYNLIFVITKLGLLFVYDL ETAAAVYRNRISPDPIFLTSEASSVGGFYAINRRGQVLLATINEATIVSFVSEQLNNLELAVNLAKRGNLPGAENLVVQRFQELFAQTKYKEAAELAAES PQGILRTPDTVAKFQSVPVQAGQTPPLLQYFGTLLTRGKLNAFESLELSRLVVNQNKKNLLENWLAEDKLECSEELGDLVKVGYTPDYLFLLQTILRTDP QGAVNFALMMSQMEGGCPVDYNTITDLFLQRNLIREATAFLLDVLKPNLPEHAFLQTKVLEINLVTFPNVADAILANGMFSHYDRPRIAQLCEKAGLYIR ALQHYAELPDIKRVIVNTHAIEPQCLTVNSNYALIHPCSEDPEIHFKYIEAAAKTGQIKEVERVTRESNFYDAEKTKNFLMEVKLPDARPLINVCDRFGF VGDLTHYLYTNNMLRYIEGYVQKVNPGNAPLVVGQLLDDECPEDFIKGLILSVRSLLPVEPLVDECEKRNRLRLLTQFLEHLVSEGSQDVHVHNALAIKA DPSRVMDYINRLDNFDGPAVGEVAVEAQLYEEAFAIFKKFNLNVQAVNVLLDNIRSIDRAVEFAFRVEEDAVWSQVAKAQLREGLVSEAIESFIRADDAT QFHEVIRAAEEAEVYHDLVKYLLMVRQKTKEPKVDSELIFAYAKIDRLGEIEEFILMPNVANLQLVGDRLFDDALYEAAKIIFAFISNWAKLAVTLVRLK QFQGAVDAARKANSAKTWKEVCFACVDAEEFRLAQMCGLNIIVQVDDLEEVSEFYQNRGYFNELISLMESGLGLERAHMGIFTELGVLYARYRYEKLMEH IKLFSTRLNIPKLIRACDEQQHWKELTYLYIQYDEFDNAATTVMNHSPEAWDHMQFKDIVVKVANVELYYKAVHFYLQEHPDLINDVLNVLALRVDHTRV VDIMRKAGHLLLVKPYMVAVQSNNVAAVNEALNQIYVEEEDYDRLRESIDLHDNFDQIGLAQKIEKHELLEMRRVAAYIYKKAGRWKQSIALSKKDNLYK DAMETASQSGDREVAEELLVYFIEKVKATGAGKKECFASCLFVCYDLIRPDIALELAWMNNMIDFAFPYLLQFIREYTGKVDELVKDKLEAQKEVKVKEQ EEKDVIAQQNMYAQLLPLALPAPPMPGMGGGPGMGGGFMPPMGGMGMPPMPQYGMPPMGGNY

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G08530			Clathrin, heavy chain (.1)		Lus10030393 [exp]	0	1
AT4G38200			SEC7-like guanine nucleotide e...		Lus10015863 [exp]	1.0	0.9726
AT3G27325			hydrolases, acting on ester bo...		Lus10032122 [exp]	1.4	0.9705
AT2G25800			Protein of unknown function (D...		Lus10013392 [exp]	2.4	0.9683
AT3G59770		AtSAC9, SAC9	ARABIDOPSIS THALIANA SUPPRESSO...		Lus10034113 [exp]	2.8	0.9601
AT2G45540			WD-40 repeat family protein / ...		Lus10009305 [exp]	5.0	0.9586
AT1G52360			Coatomer, beta' subunit (.1.2)		Lus10037525 [exp]	6.5	0.9535
AT4G00440			Protein of unknown function (D...		Lus10028148 [exp]	6.7	0.9379
AT4G19490		ATVPS54	ARABIDOPSIS THALIANA VPS54 HOM...		Lus10038410 [exp]	7.1	0.9484
AT4G38200			SEC7-like guanine nucleotide e...		Lus10022983 [exp]	8.5	0.9496
AT5G06970			Protein of unknown function (D...		Lus10008663 [exp]	8.5	0.9302

Compare expression of checked genes

Lus10030393 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.