Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G55990 610 / 0 TBL29, ESK1 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1) AT2G40150 546 / 0 TBL28 TRICHOME BIREFRINGENCE-LIKE 28 (.1) AT2G40160 429 / 3e-148 TBL30 Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) AT5G01360 350 / 4e-117 TBL3 TRICHOME BIREFRINGENCE-LIKE 3, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) AT3G11030 340 / 3e-113 TBL32 TRICHOME BIREFRINGENCE-LIKE 32 (.1) AT2G40320 327 / 2e-108 TBL33 TRICHOME BIREFRINGENCE-LIKE 33 (.1) AT1G73140 323 / 5e-107 TBL31 Plant protein of unknown function (DUF828) (.1) AT5G01620 296 / 8e-96 TBL35 TRICHOME BIREFRINGENCE-LIKE 35 (.1.2.3) AT2G38320 292 / 6e-95 TBL34 TRICHOME BIREFRINGENCE-LIKE 34 (.1) AT5G58600 230 / 5e-71 TBL44, PMR5 TRICHOME BIREFRINGENCE-LIKE 44, POWDERY MILDEW RESISTANT 5, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007497 [exp] 636 / 0 AT3G55990 681 / 0.0 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1) Lus10028974 [exp] 635 / 0 AT3G55990 678 / 0.0 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1) Lus10027813 [exp] 370 / 3e-125 AT5G01360 570 / 0.0 TRICHOME BIREFRINGENCE-LIKE 3, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) Lus10005042 [exp] 363 / 2e-122 AT5G01360 560 / 0.0 TRICHOME BIREFRINGENCE-LIKE 3, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) Lus10009839 [exp] 329 / 9e-109 AT2G40320 678 / 0.0 TRICHOME BIREFRINGENCE-LIKE 33 (.1) Lus10040953 [exp] 327 / 8e-108 AT2G40320 675 / 0.0 TRICHOME BIREFRINGENCE-LIKE 33 (.1) Lus10022676 [exp] 318 / 7e-105 AT2G38320 545 / 0.0 TRICHOME BIREFRINGENCE-LIKE 34 (.1) Lus10042845 [exp] 311 / 3e-102 AT1G73140 559 / 0.0 Plant protein of unknown function (DUF828) (.1) Lus10028141 [exp] 308 / 8e-101 AT1G73140 563 / 0.0 Plant protein of unknown function (DUF828) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G069900 [exp] 659 / 0 AT3G55990 686 / 0.0 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1) Potri.010G187600 [exp] 623 / 0 AT3G55990 660 / 0.0 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1) Potri.010G187500 [exp] 523 / 0 AT3G55990 560 / 0.0 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1) Potri.010G187300 [exp] 484 / 2e-169 AT3G55990 511 / 3e-179 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1) Potri.008G070000 [exp] 477 / 1e-166 AT3G55990 530 / 0.0 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1) Potri.016G119100 [exp] 381 / 2e-129 AT5G01360 578 / 0.0 TRICHOME BIREFRINGENCE-LIKE 3, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) Potri.008G070200 [exp] 374 / 2e-126 AT3G55990 430 / 3e-148 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1) Potri.008G073300 [exp] 347 / 4e-116 AT2G40320 694 / 0.0 TRICHOME BIREFRINGENCE-LIKE 33 (.1) Potri.010G184000 [exp] 338 / 1e-112 AT2G40320 692 / 0.0 TRICHOME BIREFRINGENCE-LIKE 33 (.1) Potri.001G376700 [exp] 332 / 2e-110 AT1G73140 640 / 0.0 Plant protein of unknown function (DUF828) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description
Representative CDS sequence Show only first row Show all	>Lus10030396 pacid=23153175 polypeptide=Lus10030396 locus=Lus10030396.g ID=Lus10030396.BGIv1.0 annot-version=v1.0 ATGAAGCAGAGGAAGAACAACCACCTCTCTGTTTTGGCGGTGGTGTGCTCTGTTTTCCTGTTCGGTGTTTTCATGTACAATGAAGACGTCAAGTCAATGG CCGACTTCCCCTTCTCCAGCTGGCCCAAATCCCAACAACAACCCACAAGCCCATCCGCTACCGTTCGATCAGCTTCATCCCTGGGGAACGAGACGTTGGT AAAGATTGAAGAAGCAGAGGAGGAGGAGAAGCAGGTTGAACTGGTTACTAAAAATGAAGAGGAACAAGTAATAGAGGTAGAAGAAGTAGAAGAGGATGGA GAAGATGAATTGCCGGGGGAAGATTGCGATCTGTTTACGGGGAAATGGGTGCTTGACAAGGAGACACATCCGTTATACAAGGAAGAAGAGTGCGAGTTTT TGACGGAGCAGGTGACTTGTATGCGGAATGGCAGGAAAGACTCCTTGTACCAGAACTGGAAATGGCAGCCCAATGACTGTTCTTTGCCCAAGTTTAAGGC AAGGCTGCTGCTGAAGAAGCTGAGGAACAAGAGGCTGATGTTTGTTGGGGATTCACTGAATAGGAACCAGTGGGAATCAATGATTTGTTTGGTTCAGTCT GTGATTCCTCCCGGCAGCAAGAGCTTGAACAAGACTGGTTCCTTGTCCGTTTTCAGGATTGAGGATTATAATGCAACGGTGGAGTTTTATTGGGCACCGT TTTTGGTGGAGTCCAACTCTGACGATCCGACGATGCATAGCATCCTCAACCGAATTATCAAGCCCGAATCCATCGACAAGCATGGCATCAACTGGAAGGG CGTCGACTACCTCATTTTCAACTCCTACATCTGGTGGATGAACACATTCAACATCAAAGTCCTGCGTGGATCGTTTAATGAAGGAGCGACAAAATACGAC GAGGTTAAACGACCAATAGCTTATCAGAGAGTATTGACGACATGGTCCAAATGGGTCGAACAAAATGTGGATCCTAATCGTACAACGGTGTTTTTCAACA GCATGTCCCCTCTTCATATCAAGAGTGACGCTTGGGGGAATCCAAACGGGATAAAGTGCGCAAAGGAAACAATACCAGTTTTGAACATATCGATGCCATT AGAAGTGGGGACGGATCGGAAGTTGTTCACGGTGGCGGTAAATGTGACATCGGAAATGAAGGTTCCTGTCCACTTCATAAACATAACGAGGTTATCAGAA TATCGAATAGATGCCCACACATCTGTGCACACAATTCGACAAGGAAAATTGTTGACCCCGGAGCAACAAGCAGATCCGATTACCTACGCCGACTGCATCC ATTGGTGTCTCCCTGGATTGCCCGATACGTGGAATGAATTCTTGTATACCCGCATTGTTTCTCGGTCTTGA
AA sequence Show only first row Show all	>Lus10030396 pacid=23153175 polypeptide=Lus10030396 locus=Lus10030396.g ID=Lus10030396.BGIv1.0 annot-version=v1.0 MKQRKNNHLSVLAVVCSVFLFGVFMYNEDVKSMADFPFSSWPKSQQQPTSPSATVRSASSLGNETLVKIEEAEEEEKQVELVTKNEEEQVIEVEEVEEDG EDELPGEDCDLFTGKWVLDKETHPLYKEEECEFLTEQVTCMRNGRKDSLYQNWKWQPNDCSLPKFKARLLLKKLRNKRLMFVGDSLNRNQWESMICLVQS VIPPGSKSLNKTGSLSVFRIEDYNATVEFYWAPFLVESNSDDPTMHSILNRIIKPESIDKHGINWKGVDYLIFNSYIWWMNTFNIKVLRGSFNEGATKYD EVKRPIAYQRVLTTWSKWVEQNVDPNRTTVFFNSMSPLHIKSDAWGNPNGIKCAKETIPVLNISMPLEVGTDRKLFTVAVNVTSEMKVPVHFINITRLSE YRIDAHTSVHTIRQGKLLTPEQQADPITYADCIHWCLPGLPDTWNEFLYTRIVSRS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G55990		TBL29, ESK1	TRICHOME BIREFRINGENCE-LIKE 29...		Lus10030396 [exp]	0	1
AT4G12350	MYB	ATMYB42	myb domain protein 42 (.1)		Lus10032226 [exp]	1.4	0.9824
AT1G72620			alpha/beta-Hydrolases superfam...		Lus10019631 [exp]	1.4	0.9797
AT4G12350	MYB	ATMYB42	myb domain protein 42 (.1)		Lus10024589 [exp]	2.8	0.9791
AT1G08290	C2H2ZnF	WIP3	WIP domain protein 3 (.1)		Lus10004887 [exp]	3.2	0.9790
AT2G38320		TBL34	TRICHOME BIREFRINGENCE-LIKE 34...		Lus10014238 [exp]	3.7	0.9771
AT3G16920		ATCTL2	chitinase-like protein 2 (.1)		Lus10037737 [exp]	4.2	0.9785
AT4G39410	WRKY	ATWRKY13, WRKY1...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10012678 [exp]	4.2	0.9745
AT3G13050		AtNiaP	nicotinate transporter, Major ...		Lus10043061 [exp]	6.0	0.9796
					Lus10017305 [exp]	6.3	0.9746
AT1G66230	MYB	ATMYB20	myb domain protein 20 (.1)		Lus10038913 [exp]	6.5	0.9679

Compare expression of checked genes

Lus10030396 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.