Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G08335 285 / 3e-98 ATICMTB, ATSTE14B ARABIDOPSIS THALIANA ISOPRENYL CYSTEINE METHYLTRANSFERASE B, Isoprenylcysteine carboxyl methyltransferase (ICMT) family (.1) AT5G23320 248 / 9e-84 ATICMTA, ATSTE14A, ATPCM LPHA-CARBOXYL METHYLTRANSFERASE, ARABIDOPSIS THALIANA ISOPRENYL CYSTEINE METHYLTRANSFERASE A, homolog of yeast STE14 A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037842 [exp] 386 / 5e-138 AT5G08335 293 / 2e-102 ARABIDOPSIS THALIANA ISOPRENYL CYSTEINE METHYLTRANSFERASE B, Isoprenylcysteine carboxyl methyltransferase (ICMT) family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G089500 [exp] 298 / 1e-103 AT5G08335 285 / 4e-99 ARABIDOPSIS THALIANA ISOPRENYL CYSTEINE METHYLTRANSFERASE B, Isoprenylcysteine carboxyl methyltransferase (ICMT) family (.1) Potri.007G074500 [exp] 295 / 2e-102 AT5G08335 298 / 4e-104 ARABIDOPSIS THALIANA ISOPRENYL CYSTEINE METHYLTRANSFERASE B, Isoprenylcysteine carboxyl methyltransferase (ICMT) family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0115 [flax] [poplar] Steroid_dh PF04140 [flax] [poplar] ICMT Isoprenylcysteine carboxyl methyltransferase (ICMT) family
Representative CDS sequence Show only first row Show all	>Lus10030398 pacid=23153008 polypeptide=Lus10030398 locus=Lus10030398.g ID=Lus10030398.BGIv1.0 annot-version=v1.0 ATGGTGCATGCTCGTTCGTCTATTCTACATCTGGAGATAAATTCATCAACTTTCTTCTCATCATCATATACTAACACGACAAATCTTGTCTGCATCAGCT TAAATTTGTGTGGTGGTATTGAGGCGTTCTCAACTGTCTTGAGTAAGATGGAAGAGTTTATCAGTCACACAGGCTACAGGCAGCTGTCCCAAATGTTTCT AGCTATTCTTTTCTTCCATAGTTCGGAATACATTCTTGCTGTTTGGGCACATGGGAAATCAAAAGTTACTTTGAGTTCACTTCTGATCAGTAAAGGCTAT ATTGTAGCCATGGTATTTTCAGTATTGGAGTACTCAGTTGAGATGCGGCTGTTTCCTGAAATTAAAGAACATTGGTGGATTAGCAACTTTGGCCTTGCTA TGGTTGCTGTCGGTGAACTGATAAGGAAACTGGCGATTATAACCGCCGGGGGAGCTTTCACACATCTCATCAGGACACGTCACGAAGAGCAGCATAAGCT GGTTACTTCTGGAGTCTATGGTTTTGTCCGTCATCCTAGTTATTTGGCTTTCCTCGTATGGTCTGTGGGTACCCAGATAATGCTGTGCAATGCTGTCTCC ACCATTGGGTTTGCTGTTGTCGTGTGGCGTTTCTTCTCGCACCGGATACCGTATGAGGAGTTCTACTTGCGACGGTTTTTCAGGTCGGAGTACGATGAAT ATGCTCTACGAACACCTTCTGGGGTTCCGTTTGTGAAGTGA
AA sequence Show only first row Show all	>Lus10030398 pacid=23153008 polypeptide=Lus10030398 locus=Lus10030398.g ID=Lus10030398.BGIv1.0 annot-version=v1.0 MVHARSSILHLEINSSTFFSSSYTNTTNLVCISLNLCGGIEAFSTVLSKMEEFISHTGYRQLSQMFLAILFFHSSEYILAVWAHGKSKVTLSSLLISKGY IVAMVFSVLEYSVEMRLFPEIKEHWWISNFGLAMVAVGELIRKLAIITAGGAFTHLIRTRHEEQHKLVTSGVYGFVRHPSYLAFLVWSVGTQIMLCNAVS TIGFAVVVWRFFSHRIPYEEFYLRRFFRSEYDEYALRTPSGVPFVK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G08335		ATICMTB, ATSTE1...	ARABIDOPSIS THALIANA ISOPRENYL...		Lus10030398 [exp]	0	1
AT5G42660			Protein of unknown function (D...		Lus10032311 [exp]	1.4	0.8765
AT1G74740		CDPK1A, CPK30, ...	CALCIUM-DEPENDENT PROTEIN KINA...		Lus10042185 [exp]	6.3	0.8716
AT2G19580		TET2	tetraspanin2 (.1)		Lus10008563 [exp]	8.9	0.8869
AT1G55265			Protein of unknown function, D...		Lus10013756 [exp]	9.9	0.8452
AT5G26667		PYR6	P-loop containing nucleoside t...		Lus10031611 [exp]	12.4	0.8500
AT5G53120		SPMS, SPDS3, AT...	spermidine synthase 3 (.1.2.3....		Lus10003398 [exp]	14.3	0.8457
AT1G63430			Leucine-rich repeat protein ki...		Lus10001489 [exp]	21.0	0.8422
AT1G08190		ZIP2, ATVPS41, ...	ZIGZAG SUPPRESSOR 2, vacuolar ...		Lus10005352 [exp]	24.0	0.7940
AT3G59310			Eukaryotic protein of unknown ...		Lus10025530 [exp]	26.3	0.8755
AT5G53310			myosin heavy chain-related (.1...		Lus10027569 [exp]	28.4	0.7742

Compare expression of checked genes

Lus10030398 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.