Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G05570 957 / 0 transducin family protein / WD-40 repeat family protein (.1.2) AT4G35560 266 / 1e-73 DAW1 DUO1-activated WD40 1, Transducin/WD40 repeat-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037841 [exp] 2093 / 0 AT5G05570 1009 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Lus10009082 [exp] 298 / 3e-84 AT5G05570 358 / 6e-106 transducin family protein / WD-40 repeat family protein (.1.2) Lus10035989 [exp] 227 / 2e-60 AT4G35560 971 / 0.0 DUO1-activated WD40 1, Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10027810 [exp] 64 / 2e-11 AT5G05570 84 / 2e-19 transducin family protein / WD-40 repeat family protein (.1.2) Lus10001254 [exp] 56 / 1e-08 AT5G05570 85 / 9e-20 transducin family protein / WD-40 repeat family protein (.1.2) Lus10002478 [exp] 44 / 4e-05 AT5G05570 73 / 3e-16 transducin family protein / WD-40 repeat family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G187700 [exp] 1243 / 0 AT5G05570 1069 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Potri.016G117800 [exp] 910 / 0 AT5G05570 900 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Potri.008G069700 [exp] 751 / 0 AT5G05570 624 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Potri.008G069750 [exp] 416 / 4e-136 AT5G05570 377 / 4e-122 transducin family protein / WD-40 repeat family protein (.1.2) Potri.005G101600 [exp] 264 / 3e-73 AT4G35560 1037 / 0.0 DUO1-activated WD40 1, Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.016G117700 [exp] 63 / 7e-12 AT5G05570 90 / 3e-22 transducin family protein / WD-40 repeat family protein (.1.2) Potri.006G101600 [exp] 58 / 5e-10 AT5G05570 72 / 8e-16 transducin family protein / WD-40 repeat family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0445 [flax] [poplar] SNARE-fusion PF00957 [flax] [poplar] Synaptobrevin Synaptobrevin CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10030399 pacid=23153176 polypeptide=Lus10030399 locus=Lus10030399.g ID=Lus10030399.BGIv1.0 annot-version=v1.0 ATGTTCACCAAATTATTTCATAAGAACGCTGATGCGGCGGAGCAACCTTCGTCCTCCGCTCACGATAATGCATCGAAAGGAATTTTGTCATCCAAAGACA TAAACCCTCGTGTAAATCTCCACTACGGGATCCCCTCAACCGCGTCTGTGATGGCTTTTGATCCCATTCAAAGCCTGTTGGCATTAGGAACATTAGATGG GAGGATCAAAGTAATTGGTGGTGACAATATTGAAGGTCTTATGGTCTCTCTTAAGCAGTTGCCCTTTAAGTACATGGAGTTCCTACAAAATCAAGGTTTC TTGGTCAGCGTCTCAAGTGAAAATGAGATCCAGGTTTGGGATTTAGAACACAGAAGAATGACATCTTCTCTGCGATGGGAGTCCAGTATAACCGCTTTTT CTGCCATACATGGATCAAGTTATATGTATGTTGGAGATGAGTATGGTATGGTGTATGTGGTAAAATATAATGCAGAAGACAAGTCGCTTGTGCCTCTGCC ATATTATGTTCCAACAAGTGCAATAGATGGTACTGCTACACCTCTATCACGCTCTTTAACGGAAACAGAGTGGAACGATATGTTAAAGATCTTTTTGCTT AAGCTTATACTTGGGATCATTATAGTGCTTAATTCTGCAGAAGCATCTGGAGGACCATCATCTGACCAGCACTCTGTCGTAGGAGTTCTCCCTCAGCCAT CTTCTCGTGGAAATAGGCTACATAACCCTCCTTCTTTTTGCAGAGTGTTAATCGCGTATGATAATGGGTTACTTATTCTATGGGATGTATCCGAAGATAA AGTTATTGTAGTTAAAGGGAACAAAGATCTCCAGTTGAAGAGTAAGATAGCAGTCAACTCTCAAGAAGAAGTCAGACAGGAACCTTCAGAGGATGAACAG TTGGATAAAGAGATAAGTGCTCTATGTTGGACATCTGGTAGTGGGACAGTTCTTGCTGTGGGCTATGTTGATGGCGACATAATGCTGTGGAACTTATCAA CAACTGTTCCATCTAGAGACAACAATGTTGTTAAGCTACAATTATCATCAGCTGACAGAAGACTACCAGTCATTATCTTGCATTGGTATCCAAAAAAATC ACGTGATGACTGTGGCCAACTCTTTGTCTATGGTGGTGATGCAATTGGATCTGAAGAAGTCCTAACGATTTTAAATCTTGACTGGTCTGCTGGGATTGGC AATCTAAAATGCATTGGGCGTACAGACATTACTCTTAATGGCTCTTTTGCTGATATGGTTCTGTTAACAAGAGGTGCTTCAGTGGACGCAAGCGGCATAT TGGTATTGACAAACCCAGGACAACTCCATTTCTATGATAGTACTTGCTTGTCTTTCTTGATGTCAAAGGAAGAGAAAAGGTGTACTGTTTCTCCAATTGA ATATCCAATGGCCATACCTACTGTTGAGCCGAACATGACTGCTGGAAAGCTTGGTTTGGTATGCAAAGGTGGAAATCTTTCAAGGGTTTTATCTGAGAAA ATCTCTTCTGCAAAGCTGAGAAGCCTCGACAGTTCTGCAAATACTAATTGGCCTTTGACTGGTGGTATTCCAAGTGAATTTTTGACAGGAGAAGATTATC AAGTTGAAAGAATTTATGTAGCAGGCTATCAAGATGGATCTGTTAGAATATTTGATGCAACATGTCCAACCTTTTCACTAATTTGTGTCTTAGGACATGA GATTAAAGGTGCACGTATTGTTTGTGCAAGTGCACCAGTATCTGCGTTGGATATTTGCTCCTTCACGTTGACTTTGGCTATAGGCAATGAACTTGGTAAC GTGCTTTTATACAGTTTGACCAGGAATACAGATGCCACGCAATTAAATTTTGTTACAGAAAATGGAAAAGAAGTCCACACATCTCAAGGAAAAGATGAGC CTCACTGCACAGCTGTGTTTTCCTTCCATACTTCCCCTATAACCACTCTTCAATTTGTGAATTCTGGATCCAAACTTGCTGTTGGATTTCACTCTGGAAG GGTGGCACTGCTTGATATTAACACATCGTCGGTGTTGTTTCTTACTGATTGTGTGCCTAAATCGGGTTCTCCAATCAAATCTCTGGATATGAGACCATTT ATAGAAACAGCTAATATGATACCAGAGGAGAGCGGATCCAAATCTATGAAGAACAATGTCAACTGGAAAATTTTTGTTGTGACCAAGGATGGACAGTTTG TACTTATTGATGGAAACACGGGGAACATTGTCATTTCTCAGTTATTGAAATCGGAAGAGGAAATGATTGTTGTTTCTACTTATGTTCTAGGCAGTAGCAA CTGTACATCTTGCTCATCTGAGAACCGTGATGCAGAAAGCAATTCTGTTCAATCCACCACCCCTGATGGGAGCCTTAACCCAGTGAATGCGGATGTAGAC TTTTCAGGAGCTGATGGTTATGAGAAGTCAGCGGAGAGTTTTCTCCTTGTGCTTTGTTCTGAGAATGCTTTGTATTTATACTCCGTCAGTGCTCTTAAAG AGGGAGATAGCCACCCTGTTCAAAGAGTGAATTTTTCAAAGCCATGCTGTTATACTAGCACTTTCAAGAAGGATGACAAAGATGTTGGACTCATTATAAT TTATCAGACTGGGGAAATTGACGTGAGGTCTTTCCCCGACTTTAAATTGGTGGGTGAAAGCTCTTTAAAGTCAATTCTGCGGTGGAACTTCAAGACTAAT ATGGAGAAGACAATATGTTCCTCCCAAAATGGTCAGATTATCTTGGTCAATGGGTGTGAGGTTGCTTCAATCTCTCTTTTGGCCTTTGAAAATGACCTCA GGATTCCAGATTCTTTACCTGTTCTTCATGACAAAGTGCTCGAAGCTGCTATTGACGCTACTGAAAATCTCTCTCCAGATAAGAAGGATAAACAAGGTTC TTTGCCTGGTATCATTGGTGGCATCCTTAAGGGCTTTCATGCAGGTAAGGTGGACGACCAGAAAGCGAGTTTCCCAGAGGTTGGAAAAAGCAATTTGGCA CATCTTGACGTCATATTTTCCAATCCCCCATACCTGAAGCCTTCTATGGACTTCCCCGATGATGCAAATGATGTCGTGGAGCTCAGCATAGATGATATCG ACCTCGATTTCAATGAACACGTGGTAGTTACATCTACGACTGAGAAGAAGAGCAATGATGATAAAGACAAGGGAAAGGAAAGAGAGAAGCTATTTGAAGG TGGGACGAGTGATTCAAAGCCCACAATGAGAACAGTAGAAGAAATCAAGAAGAAATATGGGAAGGAGGATGCTGCTGGAGCAGCTGCACTCGCAAGGGAC AAACTTGCTGAGCGTGGGGAAAAACTCGAGAGGCTGAGCCTGCGAACTGAGGAGCTGCAGAACGGGGCTGAAAATTTCGCATCACTTGCACAGGAGCTCG CTAAGCGAATGGAGAAGCGCAAATGGTGGCAGTTATGA
AA sequence Show only first row Show all	>Lus10030399 pacid=23153176 polypeptide=Lus10030399 locus=Lus10030399.g ID=Lus10030399.BGIv1.0 annot-version=v1.0 MFTKLFHKNADAAEQPSSSAHDNASKGILSSKDINPRVNLHYGIPSTASVMAFDPIQSLLALGTLDGRIKVIGGDNIEGLMVSLKQLPFKYMEFLQNQGF LVSVSSENEIQVWDLEHRRMTSSLRWESSITAFSAIHGSSYMYVGDEYGMVYVVKYNAEDKSLVPLPYYVPTSAIDGTATPLSRSLTETEWNDMLKIFLL KLILGIIIVLNSAEASGGPSSDQHSVVGVLPQPSSRGNRLHNPPSFCRVLIAYDNGLLILWDVSEDKVIVVKGNKDLQLKSKIAVNSQEEVRQEPSEDEQ LDKEISALCWTSGSGTVLAVGYVDGDIMLWNLSTTVPSRDNNVVKLQLSSADRRLPVIILHWYPKKSRDDCGQLFVYGGDAIGSEEVLTILNLDWSAGIG NLKCIGRTDITLNGSFADMVLLTRGASVDASGILVLTNPGQLHFYDSTCLSFLMSKEEKRCTVSPIEYPMAIPTVEPNMTAGKLGLVCKGGNLSRVLSEK ISSAKLRSLDSSANTNWPLTGGIPSEFLTGEDYQVERIYVAGYQDGSVRIFDATCPTFSLICVLGHEIKGARIVCASAPVSALDICSFTLTLAIGNELGN VLLYSLTRNTDATQLNFVTENGKEVHTSQGKDEPHCTAVFSFHTSPITTLQFVNSGSKLAVGFHSGRVALLDINTSSVLFLTDCVPKSGSPIKSLDMRPF IETANMIPEESGSKSMKNNVNWKIFVVTKDGQFVLIDGNTGNIVISQLLKSEEEMIVVSTYVLGSSNCTSCSSENRDAESNSVQSTTPDGSLNPVNADVD FSGADGYEKSAESFLLVLCSENALYLYSVSALKEGDSHPVQRVNFSKPCCYTSTFKKDDKDVGLIIIYQTGEIDVRSFPDFKLVGESSLKSILRWNFKTN MEKTICSSQNGQIILVNGCEVASISLLAFENDLRIPDSLPVLHDKVLEAAIDATENLSPDKKDKQGSLPGIIGGILKGFHAGKVDDQKASFPEVGKSNLA HLDVIFSNPPYLKPSMDFPDDANDVVELSIDDIDLDFNEHVVVTSTTEKKSNDDKDKGKEREKLFEGGTSDSKPTMRTVEEIKKKYGKEDAAGAAALARD KLAERGEKLERLSLRTEELQNGAENFASLAQELAKRMEKRKWWQL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G05570			transducin family protein / WD...		Lus10030399 [exp]	0	1
AT5G66420			unknown protein		Lus10014286 [exp]	1.0	0.7168
AT4G33240		FAB1A	FORMS APLOID AND BINUCLEATE CE...		Lus10005176 [exp]	15.9	0.6828
AT1G72390			unknown protein		Lus10008132 [exp]	19.6	0.6648
AT2G13370		CHR5	chromatin remodeling 5 (.1)		Lus10022423 [exp]	33.0	0.6649
AT3G48195			Phox (PX) domain-containing pr...		Lus10042108 [exp]	39.6	0.6626
AT3G17205		UPL6	ubiquitin protein ligase 6 (.1...		Lus10017098 [exp]	51.0	0.6503
AT2G25660		EMB2410	embryo defective 2410 (.1)		Lus10012415 [exp]	76.8	0.5468
AT1G60990			Glycine cleavage T-protein fam...		Lus10020818 [exp]	86.3	0.6176
AT4G10570		UBP9	ubiquitin-specific protease 9 ...		Lus10008276 [exp]	89.7	0.6152
AT1G31360		MED34, ATRECQ2,...	ARABIDOPSIS THALIANA RECQ 2, ...		Lus10034749 [exp]	97.0	0.5969

Compare expression of checked genes

Lus10030399 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.