Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G60900 353 / 4e-114 RLK1 receptor-like protein kinase 1 (.1) AT5G24080 273 / 1e-86 Protein kinase superfamily protein (.1) AT1G34300 272 / 8e-83 lectin protein kinase family protein (.1) AT2G19130 271 / 3e-82 S-locus lectin protein kinase family protein (.1) AT4G32300 259 / 1e-77 SD2-5 S-domain-2 5 (.1) AT4G00340 248 / 7e-74 RLK4 receptor-like protein kinase 4 (.1) AT2G23950 238 / 2e-71 Leucine-rich repeat protein kinase family protein (.1) AT5G35370 238 / 8e-70 S-locus lectin protein kinase family protein (.1) AT1G60800 231 / 7e-69 NIK3 NSP-interacting kinase 3 (.1) AT3G25560 230 / 2e-68 NIK2 NSP-interacting kinase 2 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024195 [exp] 460 / 5e-155 AT5G60900 367 / 3e-114 receptor-like protein kinase 1 (.1) Lus10031231 [exp] 424 / 5e-141 AT5G60900 536 / 2e-180 receptor-like protein kinase 1 (.1) Lus10031805 [exp] 416 / 1e-137 AT5G60900 530 / 5e-178 receptor-like protein kinase 1 (.1) Lus10004365 [exp] 356 / 1e-114 AT5G60900 545 / 0.0 receptor-like protein kinase 1 (.1) Lus10031230 [exp] 354 / 7e-114 AT5G60900 388 / 4e-123 receptor-like protein kinase 1 (.1) Lus10042940 [exp] 343 / 2e-109 AT5G60900 381 / 1e-120 receptor-like protein kinase 1 (.1) Lus10032438 [exp] 322 / 2e-107 AT5G60900 285 / 2e-90 receptor-like protein kinase 1 (.1) Lus10010992 [exp] 321 / 2e-101 AT5G60900 540 / 0.0 receptor-like protein kinase 1 (.1) Lus10036639 [exp] 318 / 4e-100 AT5G60900 394 / 1e-125 receptor-like protein kinase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G211366 [exp] 417 / 3e-138 AT5G60900 568 / 0.0 receptor-like protein kinase 1 (.1) Potri.003G211866 [exp] 402 / 3e-138 AT5G60900 346 / 4e-113 receptor-like protein kinase 1 (.1) Potri.T085150 [exp] 415 / 2e-137 AT5G60900 554 / 0.0 receptor-like protein kinase 1 (.1) Potri.T085000 [exp] 410 / 7e-136 AT5G60900 559 / 0.0 receptor-like protein kinase 1 (.1) Potri.T085100 [exp] 409 / 3e-135 AT5G60900 554 / 0.0 receptor-like protein kinase 1 (.1) Potri.T084701 [exp] 406 / 5e-134 AT5G60900 550 / 0.0 receptor-like protein kinase 1 (.1) Potri.003G211800 [exp] 406 / 5e-134 AT5G60900 550 / 0.0 receptor-like protein kinase 1 (.1) Potri.003G211700 [exp] 400 / 6e-132 AT5G60900 527 / 5e-177 receptor-like protein kinase 1 (.1) Potri.T084351 [exp] 386 / 1e-131 AT5G60900 419 / 4e-141 receptor-like protein kinase 1 (.1) Potri.T084500 [exp] 398 / 5e-131 AT5G60900 653 / 0.0 receptor-like protein kinase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10030400 pacid=23153187 polypeptide=Lus10030400 locus=Lus10030400.g ID=Lus10030400.BGIv1.0 annot-version=v1.0 ATGTCTAACAACAACCTTAGTGGAAGTATACCAGCAGGGCTAATGACCATTTCGTCCTTGTCAGAGTATCTGCATCATCAGTGTGAATCGCCAATAGTCC TCTGTGATATCAAGGCAAGTAGTGTGCTTCTGGACAGTGACATGGTGGGACATCTTGGTGACTTTGGATTGGCAAAGCTCCTTTCAGAAGTAAAATTTGG CTGTTCTATCAGCAGCTCCATTGGAATAAGAGGAACTGTTGGTTATGATCCTCCAGGCAGCTCTAGAATAGCCTTGATCAAAGTAAGGAGATCTAATTCT TCCACCTTTCCTTGTCAATATCCAGTTCCCAACAATGAAAACAACCAGTCAGATTTGGTTGCCAAAAGATCAGTGCTGGTGTTAGGCAGTTCTGCCTTGG TTATTATTGTTCTACTTTTGTCAGCAACGACCTTTCTGCTCATCTCGAGGAAGAGGCAGAGGAAAAACATCAATCAACGTCCTCCGCAACAACAAGAACA AGATAGTTTGTCTTTGAATCTCCGTAACTTCTCATATGGTGAGCTTGAACTCGCAACCGGAGGGTTCAAACAAGTGTTGGGAAGCGGTGCCTCAGGGACG GTTTACAAAGGAGTAATTCTTCTTCCGGATGAACAGCCCATTGCGGTGAAAAGGCTGGACAAGGTGGTAATCGAAACCCAGGATCAGGAGTTCAGAACCG AGGTGAAAGTAATCGGCGGAACGAACCATAAGAATCTGTTAAAGCTCTTGGGGTTCTGCAATGAAGGGCAGAACCGAATTCTGGTGTACGAGTTCATGAG CAACGGGTCTTTGGCTAACCTGTTATTCGGAGATCATATGAGACCCGGTTGGTACACAAGAGTGGAGATAGCTTATGCAGTTGCTAGAGGGCTCGTTTAC CTCCACGACGAATGCAGCAACCAGATCATCCACTGCGACATCAAGCCCCAAAACGTCCTGCTAGACGAATCAATGACAGCCAAAATCTCCGATTTCGGGT TGGCAAAGCTTCTGATGGCGAACCAGACGAGGACAATGACGGGAATCAGGGGCACAAAAGGGTATGTGGCACCAGAGTGGTTCAGGAACAAGCCTGTCAC GGCTAAGGTCGATGTTCACAGCTTTGGGATTCTGCTATTGGAGCTGGTTTGCTGCAGGGACAAGATGGAACTGGAGGCAGCAAATGAAGAGGAAGTGATG CTAGCGGATTGGGCGTATGAATGCTACAGTCAAGGTCAGTTGAAGAGGCTGGTGAACAATGATCTGGAGGCAATGGCTGACATAGGGAAAGTGGAGAGGT TCTTGAAGATTGCGATATGGTGCATTCAGGATGATCCATCGATGAGGCCTGCGATGAAGAAAGTTGTTTATATGTTGGAAGGAGCTGTTCATGTATCAAA ACTTCAATGCCCACGTTAA
AA sequence Show only first row Show all	>Lus10030400 pacid=23153187 polypeptide=Lus10030400 locus=Lus10030400.g ID=Lus10030400.BGIv1.0 annot-version=v1.0 MSNNNLSGSIPAGLMTISSLSEYLHHQCESPIVLCDIKASSVLLDSDMVGHLGDFGLAKLLSEVKFGCSISSSIGIRGTVGYDPPGSSRIALIKVRRSNS STFPCQYPVPNNENNQSDLVAKRSVLVLGSSALVIIVLLLSATTFLLISRKRQRKNINQRPPQQQEQDSLSLNLRNFSYGELELATGGFKQVLGSGASGT VYKGVILLPDEQPIAVKRLDKVVIETQDQEFRTEVKVIGGTNHKNLLKLLGFCNEGQNRILVYEFMSNGSLANLLFGDHMRPGWYTRVEIAYAVARGLVY LHDECSNQIIHCDIKPQNVLLDESMTAKISDFGLAKLLMANQTRTMTGIRGTKGYVAPEWFRNKPVTAKVDVHSFGILLLELVCCRDKMELEAANEEEVM LADWAYECYSQGQLKRLVNNDLEAMADIGKVERFLKIAIWCIQDDPSMRPAMKKVVYMLEGAVHVSKLQCPR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G60900		RLK1	receptor-like protein kinase 1...		Lus10030400 [exp]	0	1
AT5G10180		SULTR2;1, AST68	sulfate transporter 2;1, ARABI...		Lus10016806 [exp]	2.0	0.8924
AT2G39700		ATHEXPALPHA1.6,...	expansin A4 (.1)		Lus10023407 [exp]	6.0	0.8827
AT1G09812			unknown protein		Lus10037361 [exp]	6.1	0.8942
AT1G33170			S-adenosyl-L-methionine-depend...		Lus10010152 [exp]	7.7	0.8495
AT1G77380		AAP3, ATAAP3	amino acid permease 3 (.1)		Lus10029707 [exp]	8.4	0.8622
AT4G22730			Leucine-rich repeat protein ki...		Lus10028916 [exp]	9.8	0.8704
AT1G77380		AAP3, ATAAP3	amino acid permease 3 (.1)		Lus10042744 [exp]	10.8	0.8498
AT5G48800			Phototropic-responsive NPH3 fa...		Lus10025928 [exp]	11.6	0.8776
AT5G50130			NAD(P)-binding Rossmann-fold s...		Lus10042088 [exp]	11.7	0.8798
AT1G22610			C2 calcium/lipid-binding plant...		Lus10009460 [exp]	12.2	0.8758

Compare expression of checked genes

Lus10030400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.