Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G40060 173 / 5e-53 CLC2 clathrin light chain 2, Clathrin light chain protein (.1) AT3G51890 159 / 1e-47 Clathrin light chain protein (.1) AT2G20760 135 / 2e-37 Clathrin light chain protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037839 [exp] 293 / 5e-100 AT2G40060 135 / 4e-42 clathrin light chain 2, Clathrin light chain protein (.1) Lus10040187 [exp] 285 / 5e-97 AT2G40060 211 / 3e-68 clathrin light chain 2, Clathrin light chain protein (.1) Lus10004389 [exp] 284 / 1e-96 AT2G40060 220 / 9e-72 clathrin light chain 2, Clathrin light chain protein (.1) Lus10011194 [exp] 155 / 3e-45 AT2G20760 235 / 2e-75 Clathrin light chain protein (.1) Lus10018480 [exp] 154 / 9e-45 AT2G20760 239 / 4e-77 Clathrin light chain protein (.1) Lus10018582 [exp] 120 / 6e-32 AT2G20760 195 / 2e-59 Clathrin light chain protein (.1) Lus10039815 [exp] 115 / 2e-30 AT2G20760 189 / 2e-57 Clathrin light chain protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G190400 [exp] 200 / 1e-63 AT2G40060 215 / 1e-69 clathrin light chain 2, Clathrin light chain protein (.1) Potri.008G066800 [exp] 199 / 2e-63 AT2G40060 191 / 3e-60 clathrin light chain 2, Clathrin light chain protein (.1) Potri.016G114700 [exp] 169 / 1e-51 AT2G40060 217 / 2e-70 clathrin light chain 2, Clathrin light chain protein (.1) Potri.019G102000 [exp] 149 / 2e-42 AT2G20760 212 / 2e-65 Clathrin light chain protein (.1) Potri.011G049500 [exp] 139 / 2e-39 AT2G20760 201 / 2e-62 Clathrin light chain protein (.1) Potri.004G040100 [exp] 136 / 6e-38 AT2G20760 216 / 7e-68 Clathrin light chain protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01086 [flax] [poplar] Clathrin_lg_ch Clathrin light chain
Representative CDS sequence Show only first row Show all	>Lus10030401 pacid=23152980 polypeptide=Lus10030401 locus=Lus10030401.g ID=Lus10030401.BGIv1.0 annot-version=v1.0 ATGTCTAGCTTTGTTGACTCGTTCGACGACTCGGAAATCACTGAAATCGACTCACCCGGTGGCCACTTCGGCAGCAACAGCCATAACGATGGTGGCTACG TAGGCTACAATTCTGAACAGTTCGATGATGAGCCTGTTCCGATCTACGGTTCAGCTGGGGAATTCGTGGCGGTAGAGGAGAATGGGAGCGGAGGTTACGA CCGAGAGCTTGATGGATCCACCGGTGCTATTTTGCCGCCTCCCTCGGAGATGACGGAGATTGGACTGGCTCTCAGAGAGTGGAGAAGAGAGAATGCGTTA CGACTGGAGGAGAAGGAGAAGAAGGAAAAGGAGCTGCTGAGCAAAATAATAGAGGAGGCTGATGATTACAAATTAGAATTCCATAAGAAGAGGGAGGTTT CCTGTGAGAGCAATAAAGCAATCAACAGGGAAACTGAGGAGCTATTTGTGGCTAAGCTGGATAAGTTTCATGCTGAGGCTGACAAGGATTACTGGAAGTC AATAGCAGATCTCATTCCAAATGAAATGCCCGCTATCGAAAAGAAGAAAGCGAAGAAGGACCAAGAGAAGAAGAACCCTTCAATTACAGTGGTCCGAGGT CCGAAACCAGGGAAACCAACAGAGCTTTCAAGGATGCGTCACATACTCGTACAGCTGAAACACAGTACCCCAACGCACCTGAAGCGCACTCCAACTTCTC CAGCAAAAGATGCTAAAACTAGTGATAATGCAGAAGCTGTCACTAGCTCCACCACAATAGCAGCTGAAATCCCAAAAGTGCCAGAGCCTCTTGCTGTTGC TTGA
AA sequence Show only first row Show all	>Lus10030401 pacid=23152980 polypeptide=Lus10030401 locus=Lus10030401.g ID=Lus10030401.BGIv1.0 annot-version=v1.0 MSSFVDSFDDSEITEIDSPGGHFGSNSHNDGGYVGYNSEQFDDEPVPIYGSAGEFVAVEENGSGGYDRELDGSTGAILPPPSEMTEIGLALREWRRENAL RLEEKEKKEKELLSKIIEEADDYKLEFHKKREVSCESNKAINRETEELFVAKLDKFHAEADKDYWKSIADLIPNEMPAIEKKKAKKDQEKKNPSITVVRG PKPGKPTELSRMRHILVQLKHSTPTHLKRTPTSPAKDAKTSDNAEAVTSSTTIAAEIPKVPEPLAVA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G40060		CLC2	clathrin light chain 2, Clathr...		Lus10030401 [exp]	0	1
AT1G27435			unknown protein		Lus10032003 [exp]	1.0	0.8945
AT1G20580			Small nuclear ribonucleoprotei...		Lus10016013 [exp]	4.2	0.8748
AT1G27435			unknown protein		Lus10035173 [exp]	6.6	0.8774
AT1G76860			Small nuclear ribonucleoprotei...		Lus10040487 [exp]	8.4	0.8613
AT2G03170		ASK14	SKP1-like 14 (.1)		Lus10031171 [exp]	12.0	0.8507
AT4G00250	GeBP		DNA-binding storekeeper protei...		Lus10007188 [exp]	14.0	0.8420
AT2G15270			unknown protein		Lus10002814 [exp]	15.1	0.8683
AT4G00390	GeBP		DNA-binding storekeeper protei...		Lus10018859 [exp]	17.3	0.8328
AT2G19790			SNARE-like superfamily protein...		Lus10012924 [exp]	19.7	0.8460
AT3G16300			Uncharacterised protein family...		Lus10025833 [exp]	22.3	0.8417

Compare expression of checked genes

Lus10030401 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.