Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G40070 265 / 1e-80 unknown protein AT3G09000 170 / 5e-46 proline-rich family protein (.1) AT5G01280 116 / 1e-27 unknown protein AT2G38160 88 / 6e-19 unknown protein AT1G27850 71 / 3e-12 unknown protein AT3G08670 47 / 4e-05 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037838 [exp] 401 / 1e-132 AT2G40070 551 / 0.0 unknown protein Lus10040188 [exp] 317 / 1e-100 AT2G40070 533 / 0.0 unknown protein Lus10004390 [exp] 298 / 5e-97 AT2G40070 321 / 5e-107 unknown protein Lus10002493 [exp] 155 / 8e-41 AT2G40070 300 / 2e-95 unknown protein Lus10004824 [exp] 151 / 1e-39 AT3G09000 286 / 3e-90 proline-rich family protein (.1) Lus10027767 [exp] 124 / 2e-29 AT2G40070 288 / 5e-86 unknown protein Lus10035528 [exp] 107 / 8e-24 AT2G40070 280 / 4e-83 unknown protein Lus10011374 [exp] 85 / 1e-16 AT2G40070 151 / 8e-37 unknown protein Lus10006433 [exp] 84 / 2e-16 AT1G27850 501 / 1e-158 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G190300 [exp] 329 / 2e-105 AT2G40070 368 / 6e-121 unknown protein Potri.008G066900 [exp] 315 / 6e-100 AT2G40070 321 / 1e-102 unknown protein Potri.016G114900 [exp] 177 / 4e-48 AT2G40070 352 / 7e-114 unknown protein Potri.010G056200 [exp] 80 / 3e-15 AT1G27850 240 / 1e-64 unknown protein Potri.010G177000 [exp] 71 / 9e-13 AT2G40070 82 / 9e-17 unknown protein Potri.016G139500 [exp] 68 / 1e-11 AT3G08670 245 / 2e-73 unknown protein Potri.008G178600 [exp] 67 / 3e-11 AT1G27850 567 / 0.0 unknown protein Potri.006G110700 [exp] 55 / 9e-08 AT3G08670 251 / 1e-75 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10030402 pacid=23153209 polypeptide=Lus10030402 locus=Lus10030402.g ID=Lus10030402.BGIv1.0 annot-version=v1.0 ATGAATGGGATGTTTAGGGGTCAGGACTCCCATCATATGGAGCAGCAAGTGCAAGCGGCGGTGGTGAAGCAGAGGCAGCAGTTGAGAGGCTCGATGACGA TGAAGGATAAGGAAGAGGAACTGGCCTTGTTCTTGGAAATGAGGAAGCGCGAGAAAGAGCAGAACAATCTTCTTATGCTCAACGAGACCGGCGATTTTGA TGCGCCGTTCGAAGCCAGGCACCTCTCCTATATTCAACATCTCTTCCTCAACTACCCAGACCCCCCTCATATATTCAACATCTCTTCCTCAACCCCGGCG AAAAAAACCGGCGGTGACGATTTTCTCAACTCCGAGAACGATAAGAATGACTATGACTGGCTTTTAACACCTCCTGGAACACCTCTTTTCCCTTCCTTGG AAATGGAATCACAAAAGATTGCCATGAGTCGATCTGGTACTCCGAAGGCTCACACCACAGCCCTCAAGTCTAGGCTAGCAAATAACCAGCCAGATGGGAC AGCCGGTGGCAGCTTAATATCAAGACAATCTGCGTCGTCACCTGGGTTGAATTCTTCTGGTACTGGGGTTCGCAGGCCGTCATCATCTAGTGGTCCTGGT TCAAGGCCTGCAACTCCAACTGGGCGGCCATCACTGACAACAACAGCATCCAAACCTTCACGGTCTTCAACACCTACCTCCCGAGCTAGCTTGCCTCCAT CATCTAAGCCCACAGTTTCAGCAACCAGGTCTAGCAGTTCCACTTCATCTAGGCCTACTGGTCCTGCAAGATCCTCTACACCAACTAGATCATCAACAGC TTCATCAGTGAAGCCTACAGTTCCTGCAAGATCCTCTACACCAGCAAGGTCTACTACTGCAAGATCTTCAACACCGACAAGATCGACAGCGAGATCCTCA ACACCTACAGAAAGACCTTCTATACCACCTCCGTCCAGGTCAGCACCAAGGGCGTCAACTCCAACCCAGAGACCATCCACTCCATCTAGTGCATCAAGTA TATCTTCTGCACCACCAATCAAGTCATTGGCTTCAGTAACCAAGTCAGTTCCCACTACTACAGCTAGAAATCCAGTACCATCACGTGGGAGTTCTCCAGC ACCCAAATCTAGACCATGGAATCCTTCAGACATGCCTGGTTATTCACTAGATGCTCCACCCAACTTGCGGACATCATTATCAGACAGGCCAATTTCAGTT TCTAGGGGTAGGCCTGGAGCACCAAGTTCGCGATCTTCTTCTATTGAACCGGTTTCGAATGGAAGAATAAGAAGGCAATCATGTTCCCCTTCAAGAGGAC GTGCCCCTAACGGTGTGTTACACAACAGTGGGAGCTCTATGCCTGCAGTGAATCGTTTGTATGCAAAAGCTAATGATAACGTGAGTCCCGTTTTGATGGG CACCAAAATGGTGGATAGGGTGATGAATATGCGGAAATTAGCACCTCCGAAACATGATGACAAACATTCACCGCTTGGTAACTTGTCGGCCAAGTCTTCA TCACCAGACAGCTCAGGCTTTGGAAGAACTATGTCGAAAAAGTCTTTGGATATGGCCATCAGGCACATGGATATAAGGAGAAGCATTCCAGGTAATCTAC GGCCATTGATGACCAACATTCCAGCATCCTCAATGTACAGTGTGAGACCAGGGCCCGCCCGAAGCAGAACCATCAGCGTTTCGGACTCTTCGCCTCTTGC AACAAGCAGTAATGCTAGTTCTGAATTGAGTGTGAGCAACAACGGTCTTTCATTCGAGCTGGAGGATGAGATCGGGAATGAGAGACACGGCCGTTCTCCA ATTCGAGGCAGGTGA
AA sequence Show only first row Show all	>Lus10030402 pacid=23153209 polypeptide=Lus10030402 locus=Lus10030402.g ID=Lus10030402.BGIv1.0 annot-version=v1.0 MNGMFRGQDSHHMEQQVQAAVVKQRQQLRGSMTMKDKEEELALFLEMRKREKEQNNLLMLNETGDFDAPFEARHLSYIQHLFLNYPDPPHIFNISSSTPA KKTGGDDFLNSENDKNDYDWLLTPPGTPLFPSLEMESQKIAMSRSGTPKAHTTALKSRLANNQPDGTAGGSLISRQSASSPGLNSSGTGVRRPSSSSGPG SRPATPTGRPSLTTTASKPSRSSTPTSRASLPPSSKPTVSATRSSSSTSSRPTGPARSSTPTRSSTASSVKPTVPARSSTPARSTTARSSTPTRSTARSS TPTERPSIPPPSRSAPRASTPTQRPSTPSSASSISSAPPIKSLASVTKSVPTTTARNPVPSRGSSPAPKSRPWNPSDMPGYSLDAPPNLRTSLSDRPISV SRGRPGAPSSRSSSIEPVSNGRIRRQSCSPSRGRAPNGVLHNSGSSMPAVNRLYAKANDNVSPVLMGTKMVDRVMNMRKLAPPKHDDKHSPLGNLSAKSS SPDSSGFGRTMSKKSLDMAIRHMDIRRSIPGNLRPLMTNIPASSMYSVRPGPARSRTISVSDSSPLATSSNASSELSVSNNGLSFELEDEIGNERHGRSP IRGR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G40070			unknown protein		Lus10030402 [exp]	0	1
AT4G23740			Leucine-rich repeat protein ki...		Lus10032351 [exp]	1.0	0.9234
AT2G40070			unknown protein		Lus10037838 [exp]	4.0	0.8584
AT5G24318			O-Glycosyl hydrolases family 1...		Lus10016032 [exp]	4.2	0.8671
AT1G53730		SRF6	STRUBBELIG-receptor family 6 (...		Lus10037464 [exp]	6.9	0.8361
AT1G31320	AS2	LBD4	LOB domain-containing protein ...		Lus10040638 [exp]	7.7	0.8379
AT1G03840	C2H2ZnF	MGP	Magpie, C2H2 and C2HC zinc fin...		Lus10022080 [exp]	7.7	0.8487
AT1G47840		HXK3	hexokinase 3 (.1)		Lus10002041 [exp]	8.2	0.8132
AT2G47500			P-loop nucleoside triphosphate...		Lus10010300 [exp]	8.4	0.8645
AT5G65160		TPR14	tetratricopeptide repeat 14, t...		Lus10016804 [exp]	9.2	0.8358
AT1G21090			Cupredoxin superfamily protein...		Lus10018856 [exp]	9.4	0.8475

Compare expression of checked genes

Lus10030402 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.