Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G05690 477 / 1e-169 CBB3, DWF3, CYP90A1, CYP90A, CPD DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3) AT4G36380 267 / 5e-85 ROT3 ROTUNDIFOLIA 3, Cytochrome P450 superfamily protein (.1) AT3G13730 243 / 3e-76 CYP90D1 "cytochrome P450, family 90, subfamily D, polypeptide 1", cytochrome P450, family 90, subfamily D, polypeptide 1 (.1) AT3G50660 232 / 1e-71 PSC1, CYP90B1, CLM, SNP2, DWF4, SAV1 SUPPRESSOR OF NPH4 2, SHADE AVOIDANCE 1, PARTIALLY SUPPRESSING COI1 INSENSITIVITY TO JA 1, DWARF 4, CYTOCHROME P450 90B1, CLOMAZONE-RESISTANT, Cytochrome P450 superfamily protein (.1) AT3G30180 217 / 2e-66 CYP85A2, BR6OX2 brassinosteroid-6-oxidase 2 (.1) AT5G38970 203 / 5e-62 ATBR6OX, CYP85A1, BR6OX1 brassinosteroid-6-oxidase 1 (.1.2.3) AT1G73340 203 / 1e-60 Cytochrome P450 superfamily protein (.1) AT1G12740 192 / 9e-57 CYP87A2 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2) AT5G14400 182 / 4e-54 CYP724A1 "cytochrome P450, family 724, subfamily A, polypeptide 1", cytochrome P450, family 724, subfamily A, polypeptide 1 (.1) AT5G45340 181 / 9e-53 CYP707A3 "cytochrome P450, family 707, subfamily A, polypeptide 3", cytochrome P450, family 707, subfamily A, polypeptide 3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014850 [exp] 632 / 0 AT5G05690 679 / 0.0 DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3) Lus10040193 [exp] 524 / 0 AT5G05690 687 / 0.0 DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3) Lus10028297 [exp] 452 / 1e-160 AT5G05690 472 / 2e-168 DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3) Lus10028345 [exp] 254 / 4e-80 AT4G36380 652 / 0.0 ROTUNDIFOLIA 3, Cytochrome P450 superfamily protein (.1) Lus10041794 [exp] 248 / 5e-78 AT4G36380 643 / 0.0 ROTUNDIFOLIA 3, Cytochrome P450 superfamily protein (.1) Lus10005075 [exp] 222 / 1e-68 AT5G38970 644 / 0.0 brassinosteroid-6-oxidase 1 (.1.2.3) Lus10016065 [exp] 221 / 1e-67 AT3G50660 399 / 3e-134 SUPPRESSOR OF NPH4 2, SHADE AVOIDANCE 1, PARTIALLY SUPPRESSING COI1 INSENSITIVITY TO JA 1, DWARF 4, CYTOCHROME P450 90B1, CLOMAZONE-RESISTANT, Cytochrome P450 superfamily protein (.1) Lus10034377 [exp] 219 / 1e-67 AT5G38970 648 / 0.0 brassinosteroid-6-oxidase 1 (.1.2.3) Lus10031295 [exp] 207 / 4e-62 AT1G73340 624 / 0.0 Cytochrome P450 superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G189800 [exp] 498 / 3e-176 AT5G05690 717 / 0.0 DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3) Potri.008G067500 [exp] 488 / 2e-172 AT5G05690 710 / 0.0 DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3) Potri.001G200100 [exp] 257 / 2e-81 AT3G13730 663 / 0.0 "cytochrome P450, family 90, subfamily D, polypeptide 1", cytochrome P450, family 90, subfamily D, polypeptide 1 (.1) Potri.003G038200 [exp] 254 / 1e-80 AT3G13730 662 / 0.0 "cytochrome P450, family 90, subfamily D, polypeptide 1", cytochrome P450, family 90, subfamily D, polypeptide 1 (.1) Potri.007G018400 [exp] 254 / 2e-80 AT4G36380 626 / 0.0 ROTUNDIFOLIA 3, Cytochrome P450 superfamily protein (.1) Potri.007G026500 [exp] 237 / 5e-74 AT3G50660 757 / 0.0 SUPPRESSOR OF NPH4 2, SHADE AVOIDANCE 1, PARTIALLY SUPPRESSING COI1 INSENSITIVITY TO JA 1, DWARF 4, CYTOCHROME P450 90B1, CLOMAZONE-RESISTANT, Cytochrome P450 superfamily protein (.1) Potri.005G124000 [exp] 233 / 3e-72 AT3G50660 738 / 0.0 SUPPRESSOR OF NPH4 2, SHADE AVOIDANCE 1, PARTIALLY SUPPRESSING COI1 INSENSITIVITY TO JA 1, DWARF 4, CYTOCHROME P450 90B1, CLOMAZONE-RESISTANT, Cytochrome P450 superfamily protein (.1) Potri.010G156800 [exp] 223 / 6e-69 AT3G30180 561 / 0.0 brassinosteroid-6-oxidase 2 (.1) Potri.014G171700 [exp] 217 / 2e-66 AT3G50660 408 / 1e-138 SUPPRESSOR OF NPH4 2, SHADE AVOIDANCE 1, PARTIALLY SUPPRESSING COI1 INSENSITIVITY TO JA 1, DWARF 4, CYTOCHROME P450 90B1, CLOMAZONE-RESISTANT, Cytochrome P450 superfamily protein (.1) Potri.004G117700 [exp] 211 / 6e-64 AT5G38970 655 / 0.0 brassinosteroid-6-oxidase 1 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10030404 pacid=23153118 polypeptide=Lus10030404 locus=Lus10030404.g ID=Lus10030404.BGIv1.0 annot-version=v1.0 ATGAAAGGCGGCCTTCACAAGAGAATGCATTCTCTCACCATCAGTTTCGCCAACCCTACCATCATGAAAGATCACCTCTTGTTTTATATGGATCGGTTGG TCCGGTTGAACCTTAACTCTTGGTCCGACCGCGTCCTCCTCCAGGAAGAAGCTAAAAAGATAACGTTCGAGTTGGCGATGAAACAGCTGATGAGCAAAGA AGCAGGGGAATGGACAGAGATGTTAAGAAGGCAATACTTGCTATTAATTGAAGGATTCTTCACTCTCCCTGTTCCTCTCTTTTCCACCACATACCGTCGA GCCATACAAGCCAGGACCAAAGTTGCCGAGGCGCTGATGTCGGTAGTGAGGGAGAGGAGGAAAGAGTCGGCGGCGGCGTCGACCGGGGAGAATAATAGTA ATAAGAAGAATGATATGTTGGCGGCGCTTTTGGCAGCCGACGACGGCTTATCCGACGAGGAGGTAGTGGATTTGCTTGTGAATCTACTAGTGGCAGGATA CGAAACGACGTCGACTAGCATGACCCTGGCCGTTAAGTTCCTTACGGAGACTCCCCTGGCTTTGTCCCAACTCCGGGAAGAGCATGATGAGATAAGGGCA AGGAAAGTGAAAGTGGATGATGCTATCGAGTGGAGCGACTACAAGTCCATGCCCTTCACTCAATGTGTTGTTAACGAGACGTTGAGAGTGGCCAACATAA CTGGCGGGGTGTTCAGGCGAGCCATTGCTGATATCCCTGTCAATGGATACACAATCCCGAAAGGGTGGAAGGTGTTTGCATCATTTCGAGCTGTACATAT GAACCAGGATCATTACAAAGATGCTCGAACTTTCAACCCCTGGAGATGGCAGACAAATTCAAGGGCTGCTATTCCTGGGAATTTGTTCACTCCATTTGGA GGAGGGGGGCGAATTTGCCCTGGTTACGAGCTAGCCAGAGCCCAGCTCTCTGTTTTCCTTCACCATTTTGTCACTAGTTTCAGTTGGGAGGCAGCTGAGG AAGATAAGGTGGTGTTTTTCCCGACGACGAGGACACAAAAGCGTTATCCGATCAACGTCCGCAGACGGCATAACGCCAGAGCATTGTAG
AA sequence Show only first row Show all	>Lus10030404 pacid=23153118 polypeptide=Lus10030404 locus=Lus10030404.g ID=Lus10030404.BGIv1.0 annot-version=v1.0 MKGGLHKRMHSLTISFANPTIMKDHLLFYMDRLVRLNLNSWSDRVLLQEEAKKITFELAMKQLMSKEAGEWTEMLRRQYLLLIEGFFTLPVPLFSTTYRR AIQARTKVAEALMSVVRERRKESAAASTGENNSNKKNDMLAALLAADDGLSDEEVVDLLVNLLVAGYETTSTSMTLAVKFLTETPLALSQLREEHDEIRA RKVKVDDAIEWSDYKSMPFTQCVVNETLRVANITGGVFRRAIADIPVNGYTIPKGWKVFASFRAVHMNQDHYKDARTFNPWRWQTNSRAAIPGNLFTPFG GGGRICPGYELARAQLSVFLHHFVTSFSWEAAEEDKVVFFPTTRTQKRYPINVRRRHNARAL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G05690		CBB3, DWF3, CYP...	DWARF 3, CYTOCHROME P450 90A1,...		Lus10030404 [exp]	0	1
AT2G27385			Pollen Ole e 1 allergen and ex...		Lus10004847 [exp]	5.0	0.8879
					Lus10035688 [exp]	7.5	0.8674
AT1G63260		TET10	tetraspanin10 (.1.2.3)		Lus10029562 [exp]	7.6	0.8693
AT5G62360			Plant invertase/pectin methyle...		Lus10031717 [exp]	8.4	0.8532
					Lus10033439 [exp]	14.1	0.8243
AT5G05690		CBB3, DWF3, CYP...	DWARF 3, CYTOCHROME P450 90A1,...		Lus10014850 [exp]	14.1	0.8504
AT5G23960		ATTPS21	terpene synthase 21 (.1.2)		Lus10031590 [exp]	14.6	0.7997
AT5G42250			Zinc-binding alcohol dehydroge...		Lus10040457 [exp]	16.2	0.8191
AT4G39330		AtCAD1, ATCAD9	cinnamyl alcohol dehydrogenase...		Lus10000143 [exp]	17.3	0.8440
AT5G15310	MYB	ATMYB16, ATMIXT...	myb domain protein 16 (.1.2)		Lus10033003 [exp]	18.4	0.8404

Compare expression of checked genes

Lus10030404 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.