Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G55880 195 / 2e-63 SUE4 sulphate utilization efficiency 4, Alpha/beta hydrolase related protein (.1.2) AT2G40095 194 / 6e-63 Alpha/beta hydrolase related protein (.1) AT1G80280 115 / 7e-30 alpha/beta-Hydrolases superfamily protein (.1) AT1G52750 95 / 2e-22 alpha/beta-Hydrolases superfamily protein (.1) AT1G15490 91 / 3e-21 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014849 [exp] 291 / 6e-101 AT2G40095 212 / 8e-70 Alpha/beta hydrolase related protein (.1) Lus10028294 [exp] 268 / 4e-92 AT2G40095 262 / 1e-89 Alpha/beta hydrolase related protein (.1) Lus10040195 [exp] 268 / 2e-91 AT2G40095 231 / 8e-77 Alpha/beta hydrolase related protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G067700 [exp] 244 / 9e-83 AT2G40095 229 / 1e-76 Alpha/beta hydrolase related protein (.1) Potri.010G189600 [exp] 228 / 1e-76 AT2G40095 207 / 6e-68 Alpha/beta hydrolase related protein (.1) Potri.003G059400 [exp] 125 / 2e-33 AT1G15490 845 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.001G174900 [exp] 120 / 2e-31 AT1G80280 828 / 0.0 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10030405 pacid=23152989 polypeptide=Lus10030405 locus=Lus10030405.g ID=Lus10030405.BGIv1.0 annot-version=v1.0 ATGGGATCCCCAAAGGAAGAGAAATCAAGGAGAGTTTTGAGAGGAGTCAAGACTGTTTTCTTCTTAATCACAATGATCGTCTCCCTCCTCCTCTTCTCAG CTCCAGTCCTCCTCGTTATTGCCGATGTTCTCCTCCCAATCTCCCTCCTCTCCGCTTCCCTCTCCCCTTCATCTCTCTCCCTCACCACTCTCTCCGACGA CCTCTCCAACTACGATTTCCGTTACTCCCTCGTCGATATCCCCCTCGTTTCCATCCTCAGATCCGCCCTCATCTTCTGCGTTTACAGCTTCTGCGACGGA CCTAGGCTGTCTCGGGGACCTTACTTGGGGATTACTGCTATTTGCTCCGTCTCCTCACTGATTTACGTTTCGGCCAAGGCGCCGTACGCTTTCAGCAGGA TTGATCGGGGAGGCTATGCCCGTGGGATGGAGATTGCTCTGTTTATCTGCTCGCTGTTTCTGGCGATTGGTCACGTCGTAGTAGCTTACCGGACAAGTTG CCGAGAGCGAAGGAAGCTTCTGGTTTACAAAATTGACATTGAAGCTGTTAATCCTAAGGAAGGAAGGAAGGAAGGATGGAAGCCTCCGACAAGGAGATGA
AA sequence Show only first row Show all	>Lus10030405 pacid=23152989 polypeptide=Lus10030405 locus=Lus10030405.g ID=Lus10030405.BGIv1.0 annot-version=v1.0 MGSPKEEKSRRVLRGVKTVFFLITMIVSLLLFSAPVLLVIADVLLPISLLSASLSPSSLSLTTLSDDLSNYDFRYSLVDIPLVSILRSALIFCVYSFCDG PRLSRGPYLGITAICSVSSLIYVSAKAPYAFSRIDRGGYARGMEIALFICSLFLAIGHVVVAYRTSCRERRKLLVYKIDIEAVNPKEGRKEGWKPPTRR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G40095			Alpha/beta hydrolase related p...		Lus10030405 [exp]	0	1
AT2G28110		IRX7, FRA8	IRREGULAR XYLEM 7, FRAGILE FIB...		Lus10037376 [exp]	13.5	0.9067
AT1G68585			unknown protein		Lus10021686 [exp]	15.3	0.9001
AT1G70670		AtCLO4	Arabidopsis thaliana caleosin ...		Lus10034325 [exp]	22.7	0.8896
AT5G03510	C2H2ZnF		C2H2-type zinc finger family p...		Lus10021509 [exp]	23.5	0.8902
AT2G47010			unknown protein		Lus10007453 [exp]	25.2	0.8930
AT1G05675			UDP-Glycosyltransferase superf...		Lus10010468 [exp]	31.0	0.8866
AT1G12260	NAC	ANAC007, VND4, ...	VASCULAR RELATED NAC-DOMAIN PR...		Lus10031721 [exp]	31.7	0.8912
AT1G68585			unknown protein		Lus10035025 [exp]	37.1	0.8876
					Lus10025505 [exp]	38.8	0.8705
AT3G57450			unknown protein		Lus10029496 [exp]	40.8	0.8852

Compare expression of checked genes

Lus10030405 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.