Plant FIBer expression Database

Lus10030406 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G55490 158 / 9e-51 GINS complex protein (.1)
AT1G19080 158 / 9e-51 PSF3, TTN10 TITAN 10, Partner of SLD5 3, GINS complex protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10014848
[exp]
207 / 4e-71 AT1G19080 157 / 3e-50 TITAN 10, Partner of SLD5 3, GINS complex protein (.1.2)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G189200
[exp]
181 / 4e-60 AT3G55490 271 / 8e-94 GINS complex protein (.1)
Potri.008G068100
[exp]
178 / 1e-58 AT3G55490 273 / 1e-94 GINS complex protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF05916 Sld5 GINS complex protein
Representative CDS sequence
>Lus10030406 pacid=23153122 polypeptide=Lus10030406 locus=Lus10030406.g ID=Lus10030406.BGIv1.0 annot-version=v1.0
ATGGCGGATTACTACGAAATTGATGATATTCTTGCTGAAGAAGAGTTTGTACCTGTCCTATTTCACAAGGCGGTGAATGGGGTTAAAATCGACGAAAGTT
CAGAAAGAGGCTTTGTTGAGAAAGATTCCAAGTCGGAGCTACCATTTTGGCTTGCTCGCGAGTTACACTTGAGACAAGCCGTATCAATCAAAGTTCCTGC
CTGTTTCAATAGACAAACGAGGCTAGAAATCGAGGCTGATGCTGGATCTGTTGATTTACGATCCCGCTGTTCATACTTCTATGAATTTGGATGTAAACTC
GCACCATAG
AA sequence
>Lus10030406 pacid=23153122 polypeptide=Lus10030406 locus=Lus10030406.g ID=Lus10030406.BGIv1.0 annot-version=v1.0
MADYYEIDDILAEEEFVPVLFHKAVNGVKIDESSERGFVEKDSKSELPFWLARELHLRQAVSIKVPACFNRQTRLEIEADAGSVDLRSRCSYFYEFGCKL
AP

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G19080 PSF3, TTN10 TITAN 10, Partner of SLD5 3, G... Lus10030406
[exp]
0 1
AT3G19210 ATRAD54, CHR25 homolog of RAD54 (.1.2) Lus10019866
[exp]
8.4 0.9234
AT4G21820 binding;calmodulin binding (.1... Lus10007665
[exp]
12.2 0.9223
AT5G08020 ATRPA70B ARABIDOPSIS THALIANA RPA70-KDA... Lus10021153
[exp]
18.5 0.9087
AT3G25100 CDC45 cell division cycle 45 (.1) Lus10011840
[exp]
25.3 0.9027
AT3G51280 Tetratricopeptide repeat (TPR)... Lus10028433
[exp]
26.9 0.9076
AT1G08560 KN, ATSYP111, S... KNOLLE, syntaxin of plants 11... Lus10042527
[exp]
31.6 0.8951
AT5G44635 MCM6 MINICHROMOSOME MAINTENANCE 6, ... Lus10038384
[exp]
31.6 0.8986
AT2G33340 MAC3B MOS4-associated complex 3B (.... Lus10023728
[exp]
32.2 0.8938
AT1G59540 ZCF125 P-loop containing nucleoside t... Lus10018661
[exp]
34.1 0.8955
AT5G19330 ARIA ARM repeat protein interacting... Lus10042583
[exp]
37.5 0.8931

Lus10030406 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.