Plant FIBer expression Database

Lus10030407 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G35540 68 / 2e-13 zinc ion binding;transcription regulators (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10014847
[exp]
240 / 1e-76 AT4G35540 412 / 3e-139 zinc ion binding;transcription regulators (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.004G084700
[exp]
97 / 2e-23 AT4G35540 353 / 3e-116 zinc ion binding;transcription regulators (.1)
PFAM info
Representative CDS sequence
>Lus10030407 pacid=23152994 polypeptide=Lus10030407 locus=Lus10030407.g ID=Lus10030407.BGIv1.0 annot-version=v1.0
ATGTCCTGCTCTAGCTGCGGACACGGAATAATCCGCGATGATGATGAAGGTGATAGAAGAGGGATTGTCGAAATGGGACGCGAGGATGTCGATAACCTCC
ACCTCTCGCATGAGTGCTTGTCGATGGCGTATGAGAAGTTCTTGGAGAAAGGTAATGGGCGGAGGTCTGCTGAGGAGACTGGAGGTGTGGCTGAACTTCC
TAGACAAGGGGAATACGGAGGAGGAATTGGCCTTTATGCATCAGAATGGTGGAATGGGAAATCACCATTGAGTAAGAAACTTGTTTTGAAGGATATAGTG
GAGAAAGATGTGGGATTGGAAGCTCTGCCTCCTCCGTCTTTTGTCAAGGGTTGTGTAGACGTTAAGAGAAGGAGAGCTAAGATAAAAGCTGCAAAGGACC
GCCTTATCAGAAGTGATAAAGCTAGTACTACCAGGGATATTGAGCTTGTGGATGCTTTATATAGCAAGAAAAGGAAACGGAACGAGGAGGATATTGATTG
GGAAGGTGTTATCATCGAGGCACTTGTTGTTCATCAGGTGAAAGATGAGGAAATTGATGTAAACGGGCAAGGCCACAATGTCTTCAATGCAATTGATCTG
CCAGACTATGAATATTTTATTCATCAGTTTTGA
AA sequence
>Lus10030407 pacid=23152994 polypeptide=Lus10030407 locus=Lus10030407.g ID=Lus10030407.BGIv1.0 annot-version=v1.0
MSCSSCGHGIIRDDDEGDRRGIVEMGREDVDNLHLSHECLSMAYEKFLEKGNGRRSAEETGGVAELPRQGEYGGGIGLYASEWWNGKSPLSKKLVLKDIV
EKDVGLEALPPPSFVKGCVDVKRRRAKIKAAKDRLIRSDKASTTRDIELVDALYSKKRKRNEEDIDWEGVIIEALVVHQVKDEEIDVNGQGHNVFNAIDL
PDYEYFIHQF

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G35540 zinc ion binding;transcription... Lus10030407
[exp]
0 1
AT5G49540 Rab5-interacting family protei... Lus10016182
[exp]
6.0 0.7098
AT3G60360 EDA14, UTP11 U3 SMALL NUCLEOLAR RNA-ASSOCIA... Lus10029059
[exp]
7.7 0.7483
AT3G18165 MOS4 modifier of snc1,4 (.1) Lus10018001
[exp]
15.9 0.7177
AT1G67080 ABA4 abscisic acid (aba)-deficient ... Lus10009168
[exp]
30.3 0.7077
AT4G39150 DNAJ heat shock N-terminal dom... Lus10028809
[exp]
35.4 0.6869
AT4G36720 HVA22K HVA22-like protein K (.1) Lus10007215
[exp]
38.4 0.7033
AT4G10360 TRAM, LAG1 and CLN8 (TLC) lipi... Lus10034433
[exp]
39.7 0.6676
AT3G11730 ATFP8, AtRABD1 ARABIDOPSIS THALIANA RAB GTPAS... Lus10041117
[exp]
42.6 0.6885
AT1G03150 Acyl-CoA N-acyltransferases (N... Lus10042595
[exp]
47.1 0.6751
AT5G11150 ATVAMP713 vesicle-associated membrane pr... Lus10041035
[exp]
48.3 0.6475

Lus10030407 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.