Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G55920 305 / 7e-105 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT2G29960 281 / 7e-96 CYP19-4, ATCYP5, CYP5 CYCLOPHILIN 19-4, ARABIDOPSIS THALIANA CYCLOPHILIN 5, cyclophilin 5 (.1.2) AT5G58710 279 / 7e-95 ROC7 rotamase CYP 7 (.1) AT4G34960 218 / 2e-70 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT2G21130 214 / 6e-70 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT3G56070 212 / 7e-69 ROC2 rotamase cyclophilin 2 (.1.2) AT2G16600 212 / 7e-69 ROC3 rotamase CYP 3 (.1.2) AT4G38740 211 / 9e-69 ROC1 rotamase CYP 1 (.1) AT3G62030 209 / 1e-66 CYP20-3, ROC4 cyclophilin 20-3, rotamase CYP 4 (.1.2.3) AT5G13120 202 / 3e-64 Pnsl5, ATCYP20-2 Photosynthetic NDH subcomplex L 5, ARABIDOPSIS THALIANA CYCLOPHILIN 20-2, cyclophilin 20-2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014846 [exp] 382 / 2e-134 AT2G29960 310 / 6e-107 CYCLOPHILIN 19-4, ARABIDOPSIS THALIANA CYCLOPHILIN 5, cyclophilin 5 (.1.2) Lus10040666 [exp] 301 / 2e-103 AT5G58710 347 / 2e-123 rotamase CYP 7 (.1) Lus10018238 [exp] 300 / 3e-103 AT2G29960 348 / 4e-124 CYCLOPHILIN 19-4, ARABIDOPSIS THALIANA CYCLOPHILIN 5, cyclophilin 5 (.1.2) Lus10038315 [exp] 271 / 4e-91 AT2G29960 313 / 1e-109 CYCLOPHILIN 19-4, ARABIDOPSIS THALIANA CYCLOPHILIN 5, cyclophilin 5 (.1.2) Lus10036180 [exp] 254 / 1e-84 AT2G29960 300 / 3e-104 CYCLOPHILIN 19-4, ARABIDOPSIS THALIANA CYCLOPHILIN 5, cyclophilin 5 (.1.2) Lus10007579 [exp] 218 / 2e-71 AT2G16600 311 / 2e-110 rotamase CYP 3 (.1.2) Lus10012167 [exp] 217 / 5e-71 AT2G16600 313 / 4e-111 rotamase CYP 3 (.1.2) Lus10022012 [exp] 217 / 8e-71 AT3G56070 295 / 1e-103 rotamase cyclophilin 2 (.1.2) Lus10042553 [exp] 216 / 1e-70 AT3G56070 297 / 1e-104 rotamase cyclophilin 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G189000 [exp] 349 / 4e-122 AT3G55920 303 / 4e-105 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.009G046500 [exp] 288 / 1e-98 AT2G29960 323 / 4e-114 CYCLOPHILIN 19-4, ARABIDOPSIS THALIANA CYCLOPHILIN 5, cyclophilin 5 (.1.2) Potri.001G251700 [exp] 273 / 1e-92 AT5G58710 313 / 6e-110 rotamase CYP 7 (.1) Potri.004G173500 [exp] 226 / 6e-74 AT4G34960 317 / 7e-111 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.009G132800 [exp] 225 / 2e-73 AT4G34960 328 / 2e-115 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.019G014396 [exp] 223 / 2e-73 AT3G56070 277 / 1e-96 rotamase cyclophilin 2 (.1.2) Potri.002G021500 [exp] 221 / 2e-72 AT2G16600 278 / 2e-97 rotamase CYP 3 (.1.2) Potri.009G130100 [exp] 219 / 1e-71 AT2G21130 279 / 1e-97 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.005G240200 [exp] 218 / 4e-71 AT2G16600 276 / 2e-96 rotamase CYP 3 (.1.2) Potri.004G168800 [exp] 217 / 5e-71 AT2G16600 278 / 4e-97 rotamase CYP 3 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0475 [flax] [poplar] Cyclophil-like PF00160 [flax] [poplar] Pro_isomerase Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
Representative CDS sequence Show only first row Show all	>Lus10030408 pacid=23152967 polypeptide=Lus10030408 locus=Lus10030408.g ID=Lus10030408.BGIv1.0 annot-version=v1.0 ATGTCGACGACGACGCGCCTGATCTCCATCGCTCTCCTCTGGATCGTGGTTCTTTTTGGAACCCTAGCTTTCATCCAGCATCGTTTAAGCGACCCAGGAA TCTCGTCGGAATCCAAAAACGTCGACAGCAGCAAGTTGGAGGAGACCAAGTCTGGGGAGGGGTTGGAACAAGTGACTCACAAAGTCTACTTCGATGTTGA AATTGGTGGAGAGGCGTCTGGTCGCATTGTGATGGGTTTATTCGGGAGGGCAGTTCCAAAGACTGCAGAGAACTTTCGAGCACTATGCACTGGGGAGAAA GGCAAAGGAAAGAGTGGGAAGCCTCTACACTACAAGGGGAGCACATTCCACAGGATAATTCCTCAGTTCATGATCCAAGGAGGAGACTTCACTCTCGGTG ATGGACGTGGTGGCGAATCAATCTATGGCGACAAGTTTGCAGACGAGAACTTCAAGTTGAAGCACACAAATCCAGGAATGATATCAATGGCGAATTCTGG GCCGGACACAAATGGATCCCAGTTCTTCATTACAACTGTTGTGACAAGCTGGTTGGATGGGCATCATGTGGTGTTTGGGAAGGTGCTTTCAGGGATGGAC ATTGTGGAAAAGATAGAAGGGGAAGGCCAAAACAGTGGGGTTCCCAAAAGCAAAGTGGTTATTGTAGACAGCGGGGAAATGCCAATTAAGCAAACATTTA CTTCGCTGCAATCTTCTGGTGTTCCTGCTGTTTTTCTATTTATCCCTCCGCCTCCCACCATCGTGATAACAGTAACCGTGAATCTCTCCTTGATTGACGA CGTGAACGTAGAATCCGACGTTCCCGAGCCACCAGCGGCGGATTACACCCCAGGTCGGGTCGGAACTCTCTTTACTGGCCGGCCCTGCAACTTCACCCCG TTTGTGGCATCCTGA
AA sequence Show only first row Show all	>Lus10030408 pacid=23152967 polypeptide=Lus10030408 locus=Lus10030408.g ID=Lus10030408.BGIv1.0 annot-version=v1.0 MSTTTRLISIALLWIVVLFGTLAFIQHRLSDPGISSESKNVDSSKLEETKSGEGLEQVTHKVYFDVEIGGEASGRIVMGLFGRAVPKTAENFRALCTGEK GKGKSGKPLHYKGSTFHRIIPQFMIQGGDFTLGDGRGGESIYGDKFADENFKLKHTNPGMISMANSGPDTNGSQFFITTVVTSWLDGHHVVFGKVLSGMD IVEKIEGEGQNSGVPKSKVVIVDSGEMPIKQTFTSLQSSGVPAVFLFIPPPPTIVITVTVNLSLIDDVNVESDVPEPPAADYTPGRVGTLFTGRPCNFTP FVAS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G55920			Cyclophilin-like peptidyl-prol...		Lus10030408 [exp]	0	1
AT1G26550			FKBP-like peptidyl-prolyl cis-...		Lus10019084 [exp]	3.0	0.8861
AT1G67170			unknown protein		Lus10019966 [exp]	3.0	0.8983
AT3G51940			unknown protein		Lus10039572 [exp]	3.7	0.8933
AT1G15340		MBD10	methyl-CPG-binding domain 10 (...		Lus10019406 [exp]	4.1	0.9050
AT3G13200		EMB2769	EMBRYO DEFECTIVE 2769, Cwf15 /...		Lus10022566 [exp]	5.7	0.8964
AT1G21200	Trihelix		sequence-specific DNA binding ...		Lus10018886 [exp]	6.3	0.9017
AT5G08290		YLS8	YELLOW-LEAF-SPECIFIC GENE 8, m...		Lus10010188 [exp]	7.3	0.8751
AT1G24450		NFD2	NUCLEAR FUSION DEFECTIVE 2, Ri...		Lus10002362 [exp]	8.0	0.8902
					Lus10024538 [exp]	8.1	0.8711
AT1G15270			Translation machinery associat...		Lus10037543 [exp]	8.1	0.8950

Compare expression of checked genes

Lus10030408 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.