Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G55050 142 / 1e-38 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT2G23540 118 / 7e-30 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT3G50400 117 / 2e-29 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT3G16370 114 / 9e-29 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G71250 114 / 1e-28 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G74460 114 / 2e-28 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G37690 110 / 3e-27 SGNH hydrolase-type esterase superfamily protein (.1) AT2G42990 103 / 1e-24 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT3G04290 101 / 8e-24 ATLTL1, LTL1 Li-tolerant lipase 1 (.1) AT2G04570 100 / 9e-24 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030410 [exp] 594 / 0 AT5G55050 147 / 1e-40 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10026645 [exp] 593 / 0 AT5G55050 154 / 2e-43 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10030411 [exp] 558 / 0 AT5G55050 158 / 1e-44 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10017904 [exp] 348 / 8e-119 AT2G23540 117 / 8e-30 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10004668 [exp] 201 / 2e-61 AT5G55050 184 / 6e-55 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10026647 [exp] 195 / 7e-59 AT5G55050 159 / 4e-45 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10036966 [exp] 189 / 2e-56 AT3G04290 198 / 3e-60 Li-tolerant lipase 1 (.1) Lus10023979 [exp] 187 / 9e-56 AT5G55050 229 / 5e-72 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10025105 [exp] 186 / 1e-55 AT5G55050 233 / 2e-73 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G104900 [exp] 169 / 1e-48 AT5G55050 209 / 7e-64 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.004G180400 [exp] 154 / 2e-43 AT4G28780 200 / 4e-61 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.011G089700 [exp] 136 / 1e-36 AT5G55050 375 / 3e-129 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.003G141300 [exp] 114 / 5e-28 AT4G10950 535 / 0.0 SGNH hydrolase-type esterase superfamily protein (.1) Potri.011G076500 [exp] 113 / 5e-28 AT5G45670 533 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.007G036300 [exp] 112 / 6e-28 AT2G23540 554 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.017G130100 [exp] 112 / 7e-28 AT5G37690 526 / 0.0 SGNH hydrolase-type esterase superfamily protein (.1) Potri.012G068700 [exp] 110 / 7e-27 AT1G74460 549 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.008G104600 [exp] 109 / 1e-26 AT2G23540 370 / 3e-127 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G024400 [exp] 108 / 2e-26 AT3G04290 538 / 0.0 Li-tolerant lipase 1 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10030409 pacid=23140744 polypeptide=Lus10030409 locus=Lus10030409.g ID=Lus10030409.BGIv1.0 annot-version=v1.0 ATGGCGTCGAAATTCGAGCTATTATCGACTCCAACTGCTGTTTCTCTTGTCCTTCATTACTTCTTGTGGGTGGTTCTTCTGAATAATCCGCTTCAGTGTT CGTCAGCAAGCAATTGTTCTAACATTACGGGGTTGTTCATACTCGGCGGAGGCTCGCAAGATGTCGGGCAGAACAACTATCTCGACACGTTGGCAAAAGC TAACCAACCATTCAACGGCATTGATTTCCCTGGCTCCGTGGCCACCGGCCGGTATAGCAACGGAAGGAATATGGCAGATGCTATTGCTGCCCTGTTCTGT TACGACTTAAGTCCACCACCGTACTTCGTGCATTACTACTCCGACGACTTCATCCAGAGTGTTCTAGCGGCAGGCGGAGCTAACATGGCTTCCGCCAGCT CCGGAATTTTCAACTCGACCAGCCGGGCTATGTTTAATGAAGTGATACCATTAGGACAACAAGTGGACCAACTACTGACAATCTTCAGTAACCTTACGGT AAGGTTGGGCCCCAAGGCTGCCGCCGATTACTTGGACCGGAGTGTTTGCTTGCTAGTCACAGCAAGCGCCGACATCATGGAACAAGCCGTGAACGGCACC TCCCTCACCGACCCGGTCTTCCTCAACCGGCTTGTACTCCAATTCCTTCGTTATATTCGGACTATATACACAAATAGACTTAGGAGGTTCGCGATAGTGT CACCTCCATCGATTGGATGCAGCCCATTTGGCCGGTCTATGAATCCGACAGGCGAATGCCTACGTAGAGCCGAAACCCTGGTGGATGGTTTCATAGACCG CCTCCGCCTTGCCATGGAACTGCAGAGTCTTTTGTCCCCCGGACTCCGGTATGCAATCGGAGATGCTTACAGGGTTAACTTGCTTTTCACCGAAAATCCC CGACCATTTGGTTTCACGAATGTGACGGATGCCTGTTGTGGGACCGGAACGGCTCGGTGTACCCCGACTTCACCCCTATGCGGGAACAGTACCATTCACA ACAAATATGTGTACTGGAGTCAGTACGTTCTTACAGAGCGTGCTGCGACTTTGACAGCTAACTTCTTTGCTACCGGGGACGACTATGTCTCCCCGATCCC CTTCCCTGCGCTTGTCGGACCGTGA
AA sequence Show only first row Show all	>Lus10030409 pacid=23140744 polypeptide=Lus10030409 locus=Lus10030409.g ID=Lus10030409.BGIv1.0 annot-version=v1.0 MASKFELLSTPTAVSLVLHYFLWVVLLNNPLQCSSASNCSNITGLFILGGGSQDVGQNNYLDTLAKANQPFNGIDFPGSVATGRYSNGRNMADAIAALFC YDLSPPPYFVHYYSDDFIQSVLAAGGANMASASSGIFNSTSRAMFNEVIPLGQQVDQLLTIFSNLTVRLGPKAAADYLDRSVCLLVTASADIMEQAVNGT SLTDPVFLNRLVLQFLRYIRTIYTNRLRRFAIVSPPSIGCSPFGRSMNPTGECLRRAETLVDGFIDRLRLAMELQSLLSPGLRYAIGDAYRVNLLFTENP RPFGFTNVTDACCGTGTARCTPTSPLCGNSTIHNKYVYWSQYVLTERAATLTANFFATGDDYVSPIPFPALVGP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G55050			GDSL-like Lipase/Acylhydrolase...		Lus10030409 [exp]	0	1
AT4G17810	C2H2ZnF	ZFP12	C2H2 and C2HC zinc fingers sup...		Lus10000481 [exp]	1.4	1.0000
AT5G13660			unknown protein		Lus10005963 [exp]	2.0	1.0000
AT4G38260			Protein of unknown function (D...		Lus10016023 [exp]	2.8	0.9994
AT5G20260			Exostosin family protein (.1)		Lus10039981 [exp]	3.0	1.0000
AT2G01690			ARM repeat superfamily protein...		Lus10003679 [exp]	3.0	0.9937
AT1G73700			MATE efflux family protein (.1...		Lus10042705 [exp]	3.5	1.0000
AT5G28540		BIP1	heat shock protein 70 (Hsp 70)...		Lus10017306 [exp]	5.0	0.9212
AT4G16295		SPH1	S-protein homologue 1 (.1)		Lus10000683 [exp]	5.0	1.0000
					Lus10001790 [exp]	5.5	1.0000
					Lus10006164 [exp]	5.9	1.0000

Compare expression of checked genes

Lus10030409 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.