Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G55050 117 / 2e-29 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G74460 103 / 2e-24 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT3G50400 102 / 5e-24 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G37690 101 / 5e-24 SGNH hydrolase-type esterase superfamily protein (.1) AT2G23540 101 / 7e-24 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G71250 101 / 9e-24 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G08460 97 / 4e-22 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G18430 95 / 1e-21 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT3G16370 94 / 3e-21 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT3G04290 94 / 4e-21 ATLTL1, LTL1 Li-tolerant lipase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030409 [exp] 580 / 0 AT5G55050 157 / 2e-44 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10026645 [exp] 544 / 0 AT5G55050 154 / 2e-43 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10030411 [exp] 538 / 0 AT5G55050 158 / 1e-44 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10017904 [exp] 332 / 7e-113 AT2G23540 117 / 8e-30 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10026647 [exp] 187 / 8e-56 AT5G55050 159 / 4e-45 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10004668 [exp] 180 / 4e-53 AT5G55050 184 / 6e-55 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10036966 [exp] 176 / 2e-51 AT3G04290 198 / 3e-60 Li-tolerant lipase 1 (.1) Lus10037113 [exp] 174 / 6e-51 AT3G04290 192 / 6e-58 Li-tolerant lipase 1 (.1) Lus10037112 [exp] 168 / 1e-48 AT5G55050 176 / 1e-51 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G180400 [exp] 153 / 6e-43 AT4G28780 200 / 4e-61 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.005G104900 [exp] 152 / 2e-42 AT5G55050 209 / 7e-64 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.011G089700 [exp] 115 / 6e-29 AT5G55050 375 / 3e-129 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.017G130100 [exp] 108 / 2e-26 AT5G37690 526 / 0.0 SGNH hydrolase-type esterase superfamily protein (.1) Potri.008G104700 [exp] 104 / 8e-25 AT2G23540 280 / 1e-91 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.003G141300 [exp] 103 / 2e-24 AT4G10950 535 / 0.0 SGNH hydrolase-type esterase superfamily protein (.1) Potri.004G086700 [exp] 100 / 2e-23 AT5G37690 527 / 0.0 SGNH hydrolase-type esterase superfamily protein (.1) Potri.011G076500 [exp] 100 / 2e-23 AT5G45670 533 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G067600 [exp] 98 / 1e-22 AT1G71250 473 / 9e-168 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.013G051000 [exp] 97 / 2e-22 AT3G04290 543 / 0.0 Li-tolerant lipase 1 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10030410 pacid=23140655 polypeptide=Lus10030410 locus=Lus10030410.g ID=Lus10030410.BGIv1.0 annot-version=v1.0 ATGGCATCGAAATTCGGGCTATTGTCGACACCAACCGCTGCTCTAGCTCTTCATTACTTCTCGTGGGTGGTAGTTCTGAATAATCCTCTACAGTGTTCGT CAGCAAGCAATTGTCCAAACGTTACTGGGTTGTTCATACTCGGCGGATTCTCGAACGATGTCGGGCAGAACAACTACTTGAACACGCCGGCAAAAGCTAA CCAACCGTTCAATGGCATTGATTTCCCTGGCTCTGTGTCCACCGGCAGGGTTAGCAACGGCAGAAATTTGGCCGATGCTGTTGCTGCCCTGTTTTGTTAT CCCTTAAGTCCGCTACCGTACTTCGCGCATTACTACTCTGACGACTTCATCCGGAGTGTTTTAGCAGACGGCGGAGCTAACATGGCTTCCGCAGGCTCCG GAGTTTTCAACTCGACCGGCCGGGCCGAGTTTAATGAAGTGATGTCATTAGGACAACAAGTGGACCAACTACTGACAATCTTCAGTAATCTTACGGTAAG GTTGGGCCCCAAGGCCGCCGCCGATTACTTGGACCGGAGTGTTTGCGTGCTAGCCGCAGCAAGCGCCGACATCATCGAACAAGCAGTGAACGGCACCTCC CTCACCGACCCGGTCTTCCTCAACCGGCTTGTACTCCAATTCCTTCGCTATATTCGGACTATCTACGTAAACAGAATTACGAGGTTTGCGATAGTGTCAC CTCCAACCCTCGGATGCAGCCCATTTGCCCGAACTAAGAATCCGAGCGGTGGATGCTTACCTAGAGCCAATGCCCTGACTGAAGATTTCATCGACCGCCT CAGTTTCGCCCTGGAAGTGGAGAGGGTTTTGTCCCCCGAGCTCCGGTATGCAATCGGAGATGTTTACAGGGTCAACTTGCTTTTCATCAATAATCCTCGA CAATTTGGTTTCACGAATACGACGGCTGCCTGCTGTGGGACCGCAACGACGCCGTGTACCCCGACTTCACCTCTATGCGGGAACAGTACTGTTCGCAACC AATATGTGTATTGGAGTCAATACCTACTTACAGAGCGTGCCGCGACTTTGACAGCTAACTTCTTTGCTACCGGCGACGACTATGTCTCCCCGATCACCTT CCCCGAGCTTGTCGGACGGTGA
AA sequence Show only first row Show all	>Lus10030410 pacid=23140655 polypeptide=Lus10030410 locus=Lus10030410.g ID=Lus10030410.BGIv1.0 annot-version=v1.0 MASKFGLLSTPTAALALHYFSWVVVLNNPLQCSSASNCPNVTGLFILGGFSNDVGQNNYLNTPAKANQPFNGIDFPGSVSTGRVSNGRNLADAVAALFCY PLSPLPYFAHYYSDDFIRSVLADGGANMASAGSGVFNSTGRAEFNEVMSLGQQVDQLLTIFSNLTVRLGPKAAADYLDRSVCVLAAASADIIEQAVNGTS LTDPVFLNRLVLQFLRYIRTIYVNRITRFAIVSPPTLGCSPFARTKNPSGGCLPRANALTEDFIDRLSFALEVERVLSPELRYAIGDVYRVNLLFINNPR QFGFTNTTAACCGTATTPCTPTSPLCGNSTVRNQYVYWSQYLLTERAATLTANFFATGDDYVSPITFPELVGR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G55050			GDSL-like Lipase/Acylhydrolase...		Lus10030410 [exp]	0	1
AT2G22620			Rhamnogalacturonate lyase fami...		Lus10012720 [exp]	1.0	0.9961
					Lus10043436 [exp]	1.4	0.8668
AT5G17540			HXXXD-type acyl-transferase fa...		Lus10020332 [exp]	3.2	0.8128
					Lus10016158 [exp]	4.5	0.8144
AT4G39670			Glycolipid transfer protein (G...		Lus10035024 [exp]	4.6	0.8491
AT3G14620		CYP72A8	"cytochrome P450, family 72, s...		Lus10026179 [exp]	11.5	0.8072
					Lus10027680 [exp]	12.7	0.7899
					Lus10000984 [exp]	15.5	0.7612
AT1G20330		FRL1, CVP1, SMT...	FRILL1, COTYLEDON VASCULAR PAT...		Lus10004158 [exp]	16.4	0.7612
AT3G05550			Hypoxia-responsive family prot...		Lus10031490 [exp]	17.3	0.7612

Compare expression of checked genes

Lus10030410 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.