Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G55050 104 / 6e-25 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G74460 84 / 9e-18 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G37690 81 / 1e-16 SGNH hydrolase-type esterase superfamily protein (.1) AT1G71250 79 / 4e-16 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT3G14820 78 / 8e-16 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT2G23540 77 / 2e-15 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT3G50400 77 / 3e-15 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT4G16230 71 / 1e-13 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G59406 71 / 2e-13 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G58725 71 / 2e-13 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026645 [exp] 471 / 8e-167 AT5G55050 154 / 2e-43 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10030409 [exp] 468 / 2e-165 AT5G55050 157 / 2e-44 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10030410 [exp] 463 / 8e-164 AT5G55050 147 / 1e-40 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10017904 [exp] 292 / 5e-97 AT2G23540 117 / 8e-30 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10004668 [exp] 171 / 8e-50 AT5G55050 184 / 6e-55 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10026647 [exp] 164 / 4e-47 AT5G55050 159 / 4e-45 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10023979 [exp] 149 / 3e-41 AT5G55050 229 / 5e-72 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10025105 [exp] 147 / 1e-40 AT5G55050 233 / 2e-73 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10036966 [exp] 146 / 3e-40 AT3G04290 198 / 3e-60 Li-tolerant lipase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G180400 [exp] 132 / 4e-35 AT4G28780 200 / 4e-61 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.005G104900 [exp] 127 / 7e-33 AT5G55050 209 / 7e-64 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.011G089700 [exp] 106 / 1e-25 AT5G55050 375 / 3e-129 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.017G130100 [exp] 84 / 7e-18 AT5G37690 526 / 0.0 SGNH hydrolase-type esterase superfamily protein (.1) Potri.012G068700 [exp] 84 / 1e-17 AT1G74460 549 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.011G076500 [exp] 80 / 2e-16 AT5G45670 533 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.008G104700 [exp] 80 / 2e-16 AT2G23540 280 / 1e-91 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.008G104600 [exp] 76 / 5e-15 AT2G23540 370 / 3e-127 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.004G064500 [exp] 75 / 1e-14 AT1G29670 527 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G067600 [exp] 74 / 2e-14 AT1G71250 473 / 9e-168 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10030411 pacid=23140708 polypeptide=Lus10030411 locus=Lus10030411.g ID=Lus10030411.BGIv1.0 annot-version=v1.0 ATGGAGTCGAAATGCGGGCTATTATCGACACCAGTTGTGGCTGCTGCTCTAGTTCTTCATCTCTTCTTCTGGGTGGTGCTTCTGAATAACCCTCTTCAGT GTTCGTCAACAAGCAATTATTGTGCAAGCGTTACGGGGTTGTTCATACTCGGTGGCTTCGCGCTTGATGTCGGGCAGAACAACTACCTGAACACGTCGGC GAAAGCTAACCAACCGTTCAACGGTATCGATTTCCCTGGCTCTGTGCCAACCGGCAGGTTCAACAACGGAAGAAATTTAGCCGATGCTGTTGCTGCCCTG TTTTGTTATGACTTAAGTCCGCCACCGTATTTCGTGCATTACTACTCCGACGACTTCATCGAGAGTGTTTTAGCGGCAGGGGGGGGGGACATGGCTTCTG GAGGCTCCGGAGTTTTCAGATCGACCAGGTTTAATGAAGTGATATCATTAGGACAACAGGTGGACCAACTACTCACGATCTTTACAAACTTGACAGCAAG GTTGGGGTCCCAGGCCGCCGCCGATTACTTGAGCCGGAGCGTTTGCGTGATAGTCCCTGCAAGTGTTGACATCATCGAACAAGCAGTGAACGGCACTGCT CTCACCGACCACATCTTCCTCAACCGGCTTGTACTCCAAGTCATTCGATATATTCGGACTATATACACAAATAGAATTACGAGGTTTGCGATAGTGTCAC CTCTATCGATCGGATGCAACCCATTACGTCGGTCTCTGAATCCAACCGGTGGATGCTTCCGTAGAGCCGATATCCTGGTTGAAGGTTTCATCGACCGCCT CCGTCTCGCCATGGAAGTGCAGAGACTGTTGTGCCCCCGCCTCCGGTATGCAATCGGAGATGCTTACAAGGTCAACTTGCTTTTCATCAATAATCCTCAA CCATTTGGTTTCACAAATGTGACGGCTGCCTGCTGTGGGACCGCAACGACGCCTTGTACCCCGACTTCACCCCTATGCGGGAACAGCACTGTCCGCAACC AGTATCTGTACTGGAGTCAATACCTACTTACAGAGCGTGCCGCGACTTTGACTACGAATTTCTTTGCTACCGGCAGCGAGGATTATGTCTACCCGATCAC CTTCCCCGAGCTTGTCGAATCTTGA
AA sequence Show only first row Show all	>Lus10030411 pacid=23140708 polypeptide=Lus10030411 locus=Lus10030411.g ID=Lus10030411.BGIv1.0 annot-version=v1.0 MESKCGLLSTPVVAAALVLHLFFWVVLLNNPLQCSSTSNYCASVTGLFILGGFALDVGQNNYLNTSAKANQPFNGIDFPGSVPTGRFNNGRNLADAVAAL FCYDLSPPPYFVHYYSDDFIESVLAAGGGDMASGGSGVFRSTRFNEVISLGQQVDQLLTIFTNLTARLGSQAAADYLSRSVCVIVPASVDIIEQAVNGTA LTDHIFLNRLVLQVIRYIRTIYTNRITRFAIVSPLSIGCNPLRRSLNPTGGCFRRADILVEGFIDRLRLAMEVQRLLCPRLRYAIGDAYKVNLLFINNPQ PFGFTNVTAACCGTATTPCTPTSPLCGNSTVRNQYLYWSQYLLTERAATLTTNFFATGSEDYVYPITFPELVES

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G55050			GDSL-like Lipase/Acylhydrolase...		Lus10030411 [exp]	0	1
					Lus10006063 [exp]	3.5	0.9099
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10036868 [exp]	5.5	0.8869
AT1G01580		FRD1, ATFRO2, F...	FERRIC CHELATE REDUCTASE DEFEC...		Lus10036381 [exp]	7.3	0.8590
					Lus10022511 [exp]	8.5	0.8590
AT2G36690			2-oxoglutarate (2OG) and Fe(II...		Lus10024231 [exp]	9.5	0.8590
AT5G17490	GRAS	AtRGL3, RGL3	RGA-like protein 3 (.1)		Lus10002424 [exp]	10.4	0.8590
					Lus10005843 [exp]	11.2	0.8590
AT4G21390		B120	S-locus lectin protein kinase ...		Lus10032836 [exp]	12.0	0.8590
					Lus10010827 [exp]	12.7	0.8590
AT1G15550		ATGA3OX1, GA4	GA REQUIRING 4, ARABIDOPSIS TH...		Lus10013135 [exp]	13.4	0.8590

Compare expression of checked genes

Lus10030411 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.