Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G69340 863 / 0 appr-1-p processing enzyme family protein (.1) AT4G35750 66 / 5e-12 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) AT2G40600 60 / 1e-09 appr-1-p processing enzyme family protein (.1) AT3G10210 58 / 3e-09 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036809 [exp] 927 / 0 AT1G69340 971 / 0.0 appr-1-p processing enzyme family protein (.1) Lus10037119 [exp] 926 / 0 AT1G69340 966 / 0.0 appr-1-p processing enzyme family protein (.1) Lus10035431 [exp] 70 / 5e-13 AT3G10210 353 / 2e-124 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) Lus10031044 [exp] 70 / 5e-13 AT3G10210 353 / 3e-124 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) Lus10041841 [exp] 67 / 2e-12 AT4G35750 323 / 7e-114 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) Lus10028388 [exp] 64 / 3e-11 AT4G35750 313 / 5e-110 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) Lus10034225 [exp] 62 / 6e-11 AT2G40600 286 / 1e-98 appr-1-p processing enzyme family protein (.1) Lus10005640 [exp] 62 / 1e-10 AT4G35750 260 / 6e-89 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) Lus10021230 [exp] 60 / 4e-10 AT4G35750 265 / 7e-91 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G161500 [exp] 901 / 0 AT1G69340 926 / 0.0 appr-1-p processing enzyme family protein (.1) Potri.008G093100 [exp] 890 / 0 AT1G69340 935 / 0.0 appr-1-p processing enzyme family protein (.1) Potri.005G246800 [exp] 73 / 1e-14 AT4G35750 282 / 9e-98 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) Potri.013G092700 [exp] 71 / 7e-14 AT2G40600 309 / 1e-107 appr-1-p processing enzyme family protein (.1) Potri.005G107300 [exp] 67 / 2e-12 AT4G35750 284 / 1e-98 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) Potri.002G014700 [exp] 64 / 1e-11 AT4G35750 296 / 3e-103 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) Potri.006G043166 [exp] 61 / 3e-10 AT3G10210 359 / 6e-127 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0223 [flax] [poplar] MACRO PF01661 [flax] [poplar] Macro Macro domain
Representative CDS sequence Show only first row Show all	>Lus10030413 pacid=23140742 polypeptide=Lus10030413 locus=Lus10030413.g ID=Lus10030413.BGIv1.0 annot-version=v1.0 ATGAACAGGAGGGGCGGGTCACCGACGGAGAGTGGAGATTCTATTGTAATAACATTAGATCAGGTTCCTAGATGGAGTGATGTAGAGAGTAGGTCCACAT TCGGTTTCGAGAATGAAGATCCGTTAACGTCTAATCCCGATGGGGATACCAGTTGCAGTGGGATGACGGTATCCAGGTTTCCAGTCGATCACGAGATCAA CTCGAAGATACATTTGTGGAGGGGCAACCCTTGGGATCTCGAGGTTGATGGCGTGGTCAACTCCACGAACGAGAATCTCGACGAAGGCCACAGCAGCCCC GGCTTGCATGCTGCAGCTGGACCCGGTCTTGCGGAGGAATGTACCACACTGGGTGGATGCAGAACAGGAATGGCAAAAGTGACTAATGCCTATGACCTTC CTGCTAGGAGAGTTATACATACTGTCGGTCCAAAGTACGCGGTGAAATATCACACTGCTGCGGAGAATGCTTTGAGTCACTGCTATAGGGCATGCCTTGA GTCACTTATTGACAATGAGCTTCAAAGCATTGCGACAGGATGTATATACACAGAAGCTAAGAACTATCCTCGTGAACCAGCCGCTCATGTCGCTATAAGA ACTGTTCGTCGTTTTCTCGAGAAGCAGAAGGATAAAATAACAGCAGTTGTGTTTTGTACCGTCACCTCGAACGACACTGAAATATACAAAAGACTGCTGC CGCTCTACTTTCCTCGAGATAAACATGAGGAGGAAATGGCCATATCGAAACTTCCTGCCGATGTTGGTGATGAGAATGGCGAGACGATAATCGATGAACG TAAGATCAGAATAAAGCCTTTGCCCAAGAAGAATACTACAAGACCTCTAGAAAATCCGGTAGAGCTTCCTGTTAGCGATATGGGATTGGTGCGGAGAAAC TCTGAATATTTCGAAACTTACTTAGATCCAGCGTTCATGTCCTTGATCAAGGATCCGGATCAAAGACGCAGAGAGCAGTGGGAAAAATCTGTTCAAGCAC AGAGTGGATTCAATCCCGCTAAGCTTCTTGGTCTCGGCGATCTTGTTGGCCCTCCTTTATCGGTTGCTGATGAATACTCTCTGCACTCTAGATATCTTGC TAAAGCTAAATCTCTTAATCTCTCCGAAATTGCAGATATGAAAATCATATACCGCGGAGGAGTAGACAGTGAAGGCCGCCCAGTAATGGTGGTTGTTGGA GCACACTTCCTTCTAAGATGTCTTGATCTCGAGAGATTCGTGCTTTACGTCATCAAGGAATTCGAGCCGTTGATCCAGAAGCCTTTTTCGATTGTGTATC TACATTCCTTAGCATCTTTACAGCTGCAGCCGGACTTGGGATTCATGAAAAGAATACAGCAGATACTCGGCCGGAAGCACCAGAGAAACCTCCAAGCGAT CTATGTTCTTCACCCGACTCTGCATCTAAAAGCTATGGTTCTCGCTATGCAAATGCTCGTCGATAACGTGACGTGGAAGAAAGTAGAATACGTAGATAGG CTTCTGCAGCTTTTCAAATACGTCCCTCGCGAGCAGCTGACCATCCCCGATTTCGTCTTCCAGCATGACTTAGAAGTCAATGGAGGGAAGGGTATAATCG TCGACCCGAGAATGAAACATGTGTACCAACAACCCGAGCAAGCGTGA
AA sequence Show only first row Show all	>Lus10030413 pacid=23140742 polypeptide=Lus10030413 locus=Lus10030413.g ID=Lus10030413.BGIv1.0 annot-version=v1.0 MNRRGGSPTESGDSIVITLDQVPRWSDVESRSTFGFENEDPLTSNPDGDTSCSGMTVSRFPVDHEINSKIHLWRGNPWDLEVDGVVNSTNENLDEGHSSP GLHAAAGPGLAEECTTLGGCRTGMAKVTNAYDLPARRVIHTVGPKYAVKYHTAAENALSHCYRACLESLIDNELQSIATGCIYTEAKNYPREPAAHVAIR TVRRFLEKQKDKITAVVFCTVTSNDTEIYKRLLPLYFPRDKHEEEMAISKLPADVGDENGETIIDERKIRIKPLPKKNTTRPLENPVELPVSDMGLVRRN SEYFETYLDPAFMSLIKDPDQRRREQWEKSVQAQSGFNPAKLLGLGDLVGPPLSVADEYSLHSRYLAKAKSLNLSEIADMKIIYRGGVDSEGRPVMVVVG AHFLLRCLDLERFVLYVIKEFEPLIQKPFSIVYLHSLASLQLQPDLGFMKRIQQILGRKHQRNLQAIYVLHPTLHLKAMVLAMQMLVDNVTWKKVEYVDR LLQLFKYVPREQLTIPDFVFQHDLEVNGGKGIIVDPRMKHVYQQPEQA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G69340			appr-1-p processing enzyme fam...		Lus10030413 [exp]	0	1
AT5G20150		ATSPX1	ARABIDOPSIS THALIANA SPX DOMA...		Lus10043272 [exp]	5.7	0.8159
AT3G47420		AtG3Pp1, ATPS3	Glycerol-3-phosphate permease ...		Lus10031153 [exp]	9.1	0.7903
AT2G39780		RNS2	ribonuclease 2 (.1.2)		Lus10041084 [exp]	9.5	0.7330
AT5G20150		ATSPX1	ARABIDOPSIS THALIANA SPX DOMA...		Lus10019415 [exp]	12.7	0.7881
AT1G23110			unknown protein		Lus10007928 [exp]	13.6	0.7567
AT5G20150		ATSPX1	ARABIDOPSIS THALIANA SPX DOMA...		Lus10030095 [exp]	15.2	0.7662
AT3G52930			Aldolase superfamily protein (...		Lus10027717 [exp]	19.4	0.7580
AT1G68670	GARP		myb-like transcription factor ...		Lus10035043 [exp]	24.4	0.7590
AT3G53620		ATPPA4	pyrophosphorylase 4 (.1)		Lus10025311 [exp]	24.9	0.7752
AT1G24470		ATKCR2, KCR2	beta-ketoacyl reductase 2 (.1)		Lus10011396 [exp]	28.0	0.7118

Compare expression of checked genes

Lus10030413 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.