Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G69350 781 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G57430 398 / 2e-125 OTP84 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G18485 398 / 2e-124 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G63370 393 / 1e-123 OTP86 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G13650 394 / 3e-122 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G39952 380 / 2e-119 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G21300 374 / 1e-116 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G02330 370 / 1e-114 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G03580 368 / 4e-114 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G18750 366 / 2e-113 DOT4 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001220 [exp] 424 / 3e-135 AT3G57430 1110 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10038400 [exp] 414 / 2e-131 AT3G57430 1097 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10004081 [exp] 398 / 1e-124 AT3G63370 893 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10007806 [exp] 393 / 2e-123 AT3G03580 967 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10008967 [exp] 385 / 7e-121 AT4G21300 876 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10038138 [exp] 382 / 2e-120 AT4G39952 793 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10028855 [exp] 391 / 4e-119 AT4G21300 873 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10014707 [exp] 383 / 4e-119 AT3G63370 893 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10018978 [exp] 385 / 8e-119 AT4G13650 1258 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G093000 [exp] 863 / 0 AT1G69350 832 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.015G047600 [exp] 410 / 6e-129 AT1G18485 1077 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G215500 [exp] 408 / 1e-128 AT3G63370 922 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G074000 [exp] 402 / 6e-128 AT4G39952 892 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.009G067000 [exp] 402 / 1e-127 AT1G18485 500 / 8e-164 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.011G156800 [exp] 388 / 4e-122 AT4G21300 842 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G075800 [exp] 387 / 6e-121 AT3G57430 1189 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G111300 [exp] 385 / 1e-120 AT3G02330 1077 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G044700 [exp] 380 / 2e-119 AT3G22690 582 / 0.0 unknown protein Potri.013G058900 [exp] 385 / 7e-119 AT4G13650 1282 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10030415 pacid=23140718 polypeptide=Lus10030415 locus=Lus10030415.g ID=Lus10030415.BGIv1.0 annot-version=v1.0 ATGACGCTCTACATGCCATTGTTCAGAGCAAGCACGACCCCTCGACTCCTCACGCAGCTCCACGCCCATCTCTTCATCACAGGCCTCCACCACCACCCGC AAGCTTCAACAAAGCTCATCGAGTCATATTCACAAACATCTTCCCTGCATTCCGCCGCCCTCGTCTTCAGACACTTCCCATCTCCCGATTCCTTCATGTG GGGGGTGATCCTCAAGTGTCACGTCTGGTCACATCAGTATCAACCCGCCATTTCGCTCTACCACGACATGCTCTACTCTGGAATCCCCATCGGTGGATTC GTGTTTCCTTCCGTTCTAAGGGCTTGCGCTGGATTTGGCGATGTGGGTGTTGGAATGAAGGTTCACGGGAGTGTTATCAAGCTTGGGTTCGATTCCGATC CGGTTACCGAAACCTCGCTTTTGAACCTTTATGGGGAATTGGGTTGCTTGAAGGATGCACGGAAGGTGTTCGACGGAATGCCCATGAAGGATGTGGTTTC ATGGAGCTCGATCGTTTCGAGTTACGTTGATAATGGACAGGCGGAGGAAGGGTTGGAGATGTTTAGGCTGAATTTAAATTCTTCGACTTGTGGTGTGGAG ATTGATGCTGTGACGATGCTTACCATTGCTGAAGCATGCGGACAGGTTGGCTGTTTGAGACTAGCCAGATCAGTTCACGGTTATGTAGCGAGGAAATCGA TTCCAACTTCCGGTTCGTTGGGGGACTGTCTTGTTGTAATGTACAGCAAATGTGGAGATCTGTCCAGTGCAGAGAGAATCTTTAGAAGTAGTGATGATTC CAACAGTGTGATATCAAGAACAGCTATGATTCATTGCTACAATCGACAGGGATGGTTCCAGCAAGCTGTTGGAGTTTTTCGAGATGAAACCGAGCCTAAT GTGGTTACGATAATCGGAGTTTTGAGTTCGTTGAGTGGATTAGGTCTGATAAAAGAAGGGAAATCGGTTCATTGTTATGCTGTTTTTAAGAAAGGTTTGA GCTTTGAAGAGGAAGACTGTTTGGGACCAGGATTAGTAGGGTTCTATTCCGAATGCAATCAGTTAACTTACAGCGAGAGAGCTCTTGAAAAGATTGGGAG AAGGAATCTGATCTCATGGAATATACTCATCTCAGCTTACGTTCAACGACGATTCTTGAACGAAGCGTTTCGATTGCTACTGCAGATGCAGAGGGAATCA GAACTGATGCTGGATTCGTTTACCCTTTTGAGCGCTCTATCAGCTTGTGCTGATTCAGGGGAACTCCTGATCGGATGTCAGGTACACGCTTCGTGCATCA AACGACGGATTTCAGACGAGTTTATCGAGAATTCACTAATCGACATGTACTCGAAGTGTGGCTCGGTCGATTCAGCTTATCTAATATTTGATAGAGTCCG ATCCAAGAGTGTCATCACTTGGAACTCGATGATCACCGGGTTTTCGCATAACGGAAACTCGATAAAGGCGATAGCTTTATTCGATCGGATGTTTTCGAAT GGTGTCGAGATGAATGAAGTGACTTTCTTAACTGCAATCCAAGCTTGCTCCGACACAGGACACCTCGAAAAGGGGAAATGGCTTCACCACAAGCTGATCG TAACTTTCGGAGCAAGAAACGATCTCTACATCGAGACCGCTCTGACTGATATGTACGCAAAATGTGGAGACCTTCGATCGGCGCAACGAGTCTTCGACAC AATGCTGGAAAGAAGCGTGGTGTCATGGAGCATCATGATTGCCGGATACGGAATGCACGGCCAGATTGATTCAGCAATTTCGCTCTTCGAGCAAATGGTT TCGAATTCGTCACTAGTCAGACCTAACGAGATCACGTTCATGAACATTCTTTCTGCTTGCAGCCACTCAGGATACGTAGAGCAAGGGAAGCGTTATTTCA ACTTGATGAAGGATTTCGAAATCGAACCAAAATCGGAGCACTACGCCTGTATGGTCGATCTTCTAAGTCGAGCGGGCGATGTCGATGGAGCGTACGGACT CATCAAGTCGATGCCGGGCAGCCCAGATGCGAGCATCTGGGCTGCTTTAATCAACGGATGCAGGATTCACCGCCGGATCGATATGATTAGGGGAATCGAG ACTGATCTTCTGGAGGTAAGTACGGACGATACGGGGTACTACGCTTTGTTGTCGAATGTGTATGCAGAGGAAGGGAACTGGCAAGGGTTCGGGAAGGTGA GATCGGAGATGGAGAGACTAGGGCTGAAGAAGGTTCCCGGTTACAGCACGATTGAGCTTGATAACAGAGTGTATCGATTCGGAGCAGGGGATACGCACCA TTGGCGAACCGAGGAGCTCTGTGGGTTGTTGGAGAAGTTTGACAGATCTGCAGGGTCTGAAGGGCTTGATTTTGATGTAGTTTCTGCAAATGAGGTTTGT TGTATGGTTCCTGAGGAGGAAAAGAATGTTGTCATAAATGATAGTGATGGAAAGGTTGCAGTTGGTTATGGAACAATGCTCGATCGGTTAGTGTTGTGA
AA sequence Show only first row Show all	>Lus10030415 pacid=23140718 polypeptide=Lus10030415 locus=Lus10030415.g ID=Lus10030415.BGIv1.0 annot-version=v1.0 MTLYMPLFRASTTPRLLTQLHAHLFITGLHHHPQASTKLIESYSQTSSLHSAALVFRHFPSPDSFMWGVILKCHVWSHQYQPAISLYHDMLYSGIPIGGF VFPSVLRACAGFGDVGVGMKVHGSVIKLGFDSDPVTETSLLNLYGELGCLKDARKVFDGMPMKDVVSWSSIVSSYVDNGQAEEGLEMFRLNLNSSTCGVE IDAVTMLTIAEACGQVGCLRLARSVHGYVARKSIPTSGSLGDCLVVMYSKCGDLSSAERIFRSSDDSNSVISRTAMIHCYNRQGWFQQAVGVFRDETEPN VVTIIGVLSSLSGLGLIKEGKSVHCYAVFKKGLSFEEEDCLGPGLVGFYSECNQLTYSERALEKIGRRNLISWNILISAYVQRRFLNEAFRLLLQMQRES ELMLDSFTLLSALSACADSGELLIGCQVHASCIKRRISDEFIENSLIDMYSKCGSVDSAYLIFDRVRSKSVITWNSMITGFSHNGNSIKAIALFDRMFSN GVEMNEVTFLTAIQACSDTGHLEKGKWLHHKLIVTFGARNDLYIETALTDMYAKCGDLRSAQRVFDTMLERSVVSWSIMIAGYGMHGQIDSAISLFEQMV SNSSLVRPNEITFMNILSACSHSGYVEQGKRYFNLMKDFEIEPKSEHYACMVDLLSRAGDVDGAYGLIKSMPGSPDASIWAALINGCRIHRRIDMIRGIE TDLLEVSTDDTGYYALLSNVYAEEGNWQGFGKVRSEMERLGLKKVPGYSTIELDNRVYRFGAGDTHHWRTEELCGLLEKFDRSAGSEGLDFDVVSANEVC CMVPEEEKNVVINDSDGKVAVGYGTMLDRLVL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G69350			Tetratricopeptide repeat (TPR)...		Lus10030415 [exp]	0	1
AT5G66500			Tetratricopeptide repeat (TPR)...		Lus10041770 [exp]	1.4	0.9119
AT4G32430			Pentatricopeptide repeat (PPR)...		Lus10017032 [exp]	2.4	0.9108
AT3G02010			Pentatricopeptide repeat (PPR)...		Lus10035164 [exp]	3.0	0.8971
AT1G13410			Tetratricopeptide repeat (TPR)...		Lus10017243 [exp]	3.5	0.8476
AT2G41080			Tetratricopeptide repeat (TPR)...		Lus10022629 [exp]	4.2	0.8795
AT5G28460			Pentatricopeptide repeat (PPR)...		Lus10018279 [exp]	4.5	0.8669
AT1G79220			Mitochondrial transcription te...		Lus10031762 [exp]	8.0	0.8751
AT4G28210		EMB1923	embryo defective 1923 (.1)		Lus10033723 [exp]	9.8	0.8933
AT1G56070		LOS1, AT1G56075...	LOW EXPRESSION OF OSMOTICALLY ...		Lus10031764 [exp]	10.6	0.8772
AT5G66520			Tetratricopeptide repeat (TPR)...		Lus10038396 [exp]	11.5	0.8369

Compare expression of checked genes

Lus10030415 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.