Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G03380 635 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G11290 348 / 1e-108 CRR22 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G01580 329 / 4e-103 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G16610 327 / 2e-102 pentatricopeptide (PPR) repeat-containing protein (.1) AT4G18750 325 / 3e-99 DOT4 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G39350 315 / 2e-97 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G39530 316 / 2e-96 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G40720 309 / 1e-93 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G33990 309 / 1e-93 EMB2758 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G69350 308 / 1e-93 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026641 [exp] 593 / 0 AT2G03380 354 / 1e-116 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10017446 [exp] 342 / 3e-106 AT1G11290 1152 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10039703 [exp] 326 / 2e-102 AT4G18750 394 / 6e-127 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10018492 [exp] 326 / 2e-102 AT4G18750 385 / 2e-123 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10001220 [exp] 331 / 2e-101 AT3G57430 1110 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10015225 [exp] 327 / 8e-100 AT4G18750 990 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10019735 [exp] 325 / 8e-100 AT4G33990 1015 / 0.0 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10022890 [exp] 324 / 9e-100 AT3G61170 865 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10024936 [exp] 322 / 7e-99 AT3G61170 855 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G161800 [exp] 708 / 0 AT2G03380 786 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G466066 [exp] 345 / 3e-107 AT4G33990 1067 / 0.0 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G124400 [exp] 341 / 3e-107 AT5G39350 785 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G006800 [exp] 340 / 1e-105 AT3G16610 687 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.004G059400 [exp] 340 / 4e-105 AT4G18750 1110 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G191000 [exp] 337 / 2e-104 AT1G11290 1178 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G178200 [exp] 332 / 2e-102 AT4G35130 919 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G164900 [exp] 329 / 3e-101 AT5G13230 950 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.012G080200 [exp] 327 / 1e-100 AT1G11290 447 / 3e-145 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G058700 [exp] 328 / 2e-100 AT1G15510 1113 / 0.0 VANILLA CREAM 1, ARABIDOPSIS EARLY CHLOROPLAST BIOGENESIS2, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10030418 pacid=23140594 polypeptide=Lus10030418 locus=Lus10030418.g ID=Lus10030418.BGIv1.0 annot-version=v1.0 ATGGCGATACTCCGGCGAGTCCACCATCAATTACTCAAGGGAAAAAATTTCTTCTTTCTATGGAAGAAGACCAGAAGCTTCTCCTACGTAACAACCCACG ACACCCATTTCCCTTCAACTCCATCGCTCTGCTCCATCTCTTCACTCTCGTGGTTCCATCACCTGAATCTCTCCAACGTCGACATCCGCTCATTGAAGAG CATCCACGTTCACCTCTTCGTCCACGGAATCTCCGGCGACCGTTTCACTGCTACCAAATTGTTAAGTCTATATGGTTCGTTTGGGTTGGTCGATGTTGCA CGCAAGGTGTTTGACGAAATTACTGAACCAGATGTTTTTTCCTTGAAAGTGATGACGAGGCTGTACTTTCTGAACGGATGGTACCGAGAGCTTGTCGATT TTCACGAGGCTAATTCGACGAGACGGTGTGAGGGGGATGATAATAATGTTCTGTTCTCAATGTTGCTGAAGGCGTGTAGCGAATTGAAGGAATTGAACCC GGGAAGGAAACTCCATTGCTGGATTGTGAAAGCTGGGAATCCTGATGGTTATGTTATCTCCGGGCTGGTTGATATGTATTCCAAATGTGGAGAGATCGAA TCCGCGAGAGAGGTGTTCGAACAAGATGATGTTGTCAATAGAAGTGTAGTGAGGTGGACATCGATGATTTCAGGTTACGTGCAGAACGATCGAGCTGAGG ATGCGGTGATTCTGTTCAATCGAATGAGATATTTCTTGCAGGCTAACAAATTTACTCTAGGGAGCTTGCTTACCGCGTGTACAAAGCTGGCAGCTTTGCA TCAGGGTAAGTGGATTCACGGATACATAATCAAGAACAGTATCAAATCGAATCCTTATCTTGAAACATCTCTCGTAGATATGTATATCAAATGTGGTAGC CTTATCGATGCCAGGTCAGCATTTAATGAGCTTTCTTCTGTTGTTCCTGATCTTGTCTCATGGACTGCTATGATTGTTGGCTATGCTCAAGGTGGTTTCC CGGCAGAAGCTGTGCATTTGTTCGTTGATAAGAAATGGGAATCCATCAAACCGAACGGAATCACCATTTCCAGTGTGCTGTCATCTTGTGCACAAATTAG TTGGTTGAGCTTAGGAAAGTCTGCTCATTGTGTTGGTGTTAAGCTGGGATTATTGGATGCTAATGTCGTCAATGCTTTGATCGACATGTACGCGAAAAAC AATGAGAATTTGGACTCTTTTCGTGTGTTTCAAACAATGTCGAACACTAACGATGTGGTAGCGTGGAACTCGATTGTTTCTGGTTACTCGCAGAACGGCT CTGCACATGAATCACTCGCATTGTTTCAAGAAATGAGAACGAAATCTTCGGTCTTACCTGATGCAATTACTCTGGTTAGTGCCTTCTCTGCTTTCGGAAC CCTAGGAGCTCTTCTTGCTGGATCTTCCCTTTATTCTTATTCCATCAAAGTAGGATTCTTTCCCGCTAGTGTTTATCTTGGTACTGCAATTTTAACCTTC TACGCCAAATGTGGAGATGCTCTATCGTCTCGTGGAGTGTTCGACGAAATGGAAGAGAAGAATATCGCCACGTGGAGCGCGATGATTGGTGGGTACGGAT CACAGGGAGATTCTGTTGCTTCACTTGCACTCTTCAACACAATGCTGAGTGTTAACTCACTGCAGCCTAACGAAGCGGTCTTTACATCGATTTTATCGAC TTGCAGCCATACAGGGATGGTTGGTGAAGGTTGGAAGATCTTCAACTCAATGTGTAAAACATTTAACTTTGTTCCTTCTGTGAAGCATTATGCTTGTATG GTTGATCTTCTGGCTCGAGACGGAAGGCTAGAAGAAGCCCTGGAGTTCCTTGAACAATTGCCTGTCGTCCATCAACAAGATGTGAGCTTGCTTGGGTCGT TTCTCCATGGGTGCGGCTTGCATTCGAGATTCGATCTTGCAGAAGTGGTGATTAAGAGAATATTCATGGAGTGTGGTGATCTTGTTGAGAGTTGTTACTA TGTTCTTGTGTGCAATCTGTATGCTTCAGATGGAAGGTGGGGAGATGTTGAAGTGGTGAGGGAGGTGATGAAGCAAAGAGGGTTAACCAAGTTTCCAGGG CGAAGTCTAAGTGGACATGAATGCTGA
AA sequence Show only first row Show all	>Lus10030418 pacid=23140594 polypeptide=Lus10030418 locus=Lus10030418.g ID=Lus10030418.BGIv1.0 annot-version=v1.0 MAILRRVHHQLLKGKNFFFLWKKTRSFSYVTTHDTHFPSTPSLCSISSLSWFHHLNLSNVDIRSLKSIHVHLFVHGISGDRFTATKLLSLYGSFGLVDVA RKVFDEITEPDVFSLKVMTRLYFLNGWYRELVDFHEANSTRRCEGDDNNVLFSMLLKACSELKELNPGRKLHCWIVKAGNPDGYVISGLVDMYSKCGEIE SAREVFEQDDVVNRSVVRWTSMISGYVQNDRAEDAVILFNRMRYFLQANKFTLGSLLTACTKLAALHQGKWIHGYIIKNSIKSNPYLETSLVDMYIKCGS LIDARSAFNELSSVVPDLVSWTAMIVGYAQGGFPAEAVHLFVDKKWESIKPNGITISSVLSSCAQISWLSLGKSAHCVGVKLGLLDANVVNALIDMYAKN NENLDSFRVFQTMSNTNDVVAWNSIVSGYSQNGSAHESLALFQEMRTKSSVLPDAITLVSAFSAFGTLGALLAGSSLYSYSIKVGFFPASVYLGTAILTF YAKCGDALSSRGVFDEMEEKNIATWSAMIGGYGSQGDSVASLALFNTMLSVNSLQPNEAVFTSILSTCSHTGMVGEGWKIFNSMCKTFNFVPSVKHYACM VDLLARDGRLEEALEFLEQLPVVHQQDVSLLGSFLHGCGLHSRFDLAEVVIKRIFMECGDLVESCYYVLVCNLYASDGRWGDVEVVREVMKQRGLTKFPG RSLSGHEC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G03380			Pentatricopeptide repeat (PPR)...		Lus10030418 [exp]	0	1
AT4G19191			Tetratricopeptide repeat (TPR)...		Lus10031028 [exp]	1.0	0.8416
AT3G11460			Pentatricopeptide repeat (PPR)...		Lus10022702 [exp]	2.0	0.8393
AT4G02750			Tetratricopeptide repeat (TPR)...		Lus10003857 [exp]	4.5	0.8037
AT1G65730		YSL7	YELLOW STRIPE like 7 (.1)		Lus10005210 [exp]	6.2	0.7197
AT3G13770			Pentatricopeptide repeat (PPR)...		Lus10040504 [exp]	6.2	0.8137
AT5G13230			Tetratricopeptide repeat (TPR)...		Lus10014956 [exp]	6.9	0.7548
AT2G32400		ATGLR3.7, GLR5	GLUTAMATE RECEPTOR 3.7, glutam...		Lus10039672 [exp]	8.0	0.7291
AT5G08510			Pentatricopeptide repeat (PPR)...		Lus10030225 [exp]	8.5	0.7413
AT1G31830			Amino acid permease family pro...		Lus10003232 [exp]	8.9	0.7521
AT3G25970			Pentatricopeptide repeat (PPR)...		Lus10030249 [exp]	9.5	0.7885

Compare expression of checked genes

Lus10030418 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.