Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G13940 313 / 6e-91 Plant protein of unknown function (DUF863) (.1) AT1G26620 228 / 4e-62 Plant protein of unknown function (DUF863) (.1) AT1G69360 194 / 8e-51 Plant protein of unknown function (DUF863) (.1) AT1G12120 43 / 0.0009 Plant protein of unknown function (DUF863) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026640 [exp] 1434 / 0 AT1G13940 323 / 7e-96 Plant protein of unknown function (DUF863) (.1) Lus10037122 [exp] 419 / 2e-132 AT1G69360 257 / 8e-74 Plant protein of unknown function (DUF863) (.1) Lus10036807 [exp] 323 / 2e-96 AT1G69360 254 / 9e-73 Plant protein of unknown function (DUF863) (.1) Lus10021644 [exp] 69 / 2e-11 AT1G13940 105 / 5e-23 Plant protein of unknown function (DUF863) (.1) Lus10034722 [exp] 63 / 1e-09 AT1G13940 106 / 3e-23 Plant protein of unknown function (DUF863) (.1) Lus10024611 [exp] 51 / 4e-06 AT1G12120 97 / 6e-22 Plant protein of unknown function (DUF863) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G092800 [exp] 656 / 0 AT1G13940 459 / 2e-144 Plant protein of unknown function (DUF863) (.1) Potri.010G162000 [exp] 595 / 0 AT1G13940 437 / 2e-136 Plant protein of unknown function (DUF863) (.1) Potri.017G088900 [exp] 119 / 4e-27 AT1G69360 152 / 2e-37 Plant protein of unknown function (DUF863) (.1) Potri.004G125900 [exp] 110 / 2e-24 AT1G69360 149 / 2e-36 Plant protein of unknown function (DUF863) (.1) Potri.001G121200 [exp] 50 / 1e-05 AT1G62530 106 / 5e-25 Plant protein of unknown function (DUF863) (.1), Plant protein of unknown function (DUF863) (.2) Potri.003G112000 [exp] 50 / 1e-05 AT1G62530 109 / 4e-26 Plant protein of unknown function (DUF863) (.1), Plant protein of unknown function (DUF863) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05904 [flax] [poplar] DUF863 Plant protein of unknown function (DUF863)
Representative CDS sequence Show only first row Show all	>Lus10030419 pacid=23140543 polypeptide=Lus10030419 locus=Lus10030419.g ID=Lus10030419.BGIv1.0 annot-version=v1.0 ATGGGAACAAAAGTACAGTGTGAAAGCTACTTTCCTGGACATTTCCAAATGAGGGATATTAGTGATGATGCCAACAGTTCTAGCTGGCCGCAATACTACG GAGATAATAAAACCTTCACAAATGGTCAATACTACAATGGTAACTTTTTGCCAAGGACCATGACAGAGAGATATCCCGGGTACGACAAGGACTTAGTAAA GCGGACAATGCTCGAGCACGAGGCTACATTTAGGCACCAGGTATGTGTTCCTTCCAGTGAATTTGTCTCCGGAAAGTTGCATTCTTTCCACCTCTCTGAT TTGGAAAATTTCGCTTTTCAGCTGTACGAACTTCACCGCCTGTATAGAATACAAAGGGACTTGATGGATGAAGTTAAGAGGAAGGAACTTTATAAAATTC GGATGCGGGAGGTCGACGCATCGATGCCATCTAGCCCTTCTGCATCTCATGTTACGTCTGAAGATGCTAGGAGACGGCATATCCCCGGCTTTCCACTGGG GAATTCGGTTTGTACTCGTCCTTCTACGTCTGCTATTGATAATAATACCAATTCACCCTTAAGTTCTGTCATGGGGAGCAGCACATATACTACTAGTCCC TTGCCCTTCCAGAATGGGACTACTTCGAAGGAATTGGAGATATTGGAGTCTAGACCGACAAAGGTGAGGAGGAAGATGTTCGATCTTCGGCTTCCAGCTG ATGAGGACATAGTTACAGAAGAAGGGAGACCGTTAAAGGGCGTTCATAATTTGTCAGGAAATGTACAACATCGGAATCTGAATAACACTATGAAGGCTAA CTGTCGAGATGATGTTTCGCTTGCTGAATCATGTCCAAGGGGGGTCAGGACTAGTGTGGCTGATTTGAACGAACCAATTGTTATTGAAGAAACTAATCCT TCTGAACATCCTTTCCATGGGAAGATTAGAGGGAGTGAATTGGATCGTAGACAGATGTCGTGGAAGTCTAATCACGGGAGCGATCATAAGGGTCCTTTGC CTCGTCGTGATTTTCAGGCTAATGGTAATGGAAATCATCAGTGGTTGATGAAACCTACATGTGAAGAAAGCTTGCCATCGTCTTCGCGGTCAATGCAAGC CCTATTCAACAGAGCTCTCGAGCCGCATCCTCCTAACTTCGCCATTGTTGATCATAAGAGGAATCATCACCTGAGTGATAGTATTGACAGCTCTAATAGC TGTCATCGAGAAGCTGTTATTGCTTCGAGTGTATCCAATCCTTACCCGTTTGCTCCTGATCCGAGCAAGTCTTGGTCTCACTCGGCTCACTCAGTAGTGC ATCATCCTCATTTGAACTCGTCTGCAACTTGGAGTAAGAGTCCTCAGTCGTCGACAACTCAAAGCAATGGGAAATTGGCAGATAGATGGAATTCTAACAC CATCTCTACTTCTAACCAAAAGTTCGGAAGCGTAATGGCTAATCGAAATGGATATCAGCACAATGGAATCTCGACCGGGTTGAATGAACTGCAGTTCTCT GTTCCTCCAAGAAGCTATGGTCAATTGAACCAGATCAATCATGGTTCAAGGTACATGGATTTGAAGCCTGTAAAAGGAGTGAACTTGAATGTAGCGATTT CGAATAGTTCGACGAATAAGGCAGGTGCTCAACATGGCATTGAGGTCATAGATCTGGAGAGAAAGGATGACATCAGCAACCTTTCTTCTCTGCCTTGGCT GAGGGCGGAGATCGATCTCAATGCAGGGAAATCGAGCTTCTTGGGATCTTCTAATCATCCGGTTTGCCATGGTAATAAGAAATCAGCCTCTCAATCTACT AATCCTGAGTCCAGTAGGAATAAGGAGATCGACGACTCTACAGGCTGTAATGGTAAAATTCTTGGCTTTCCGATTTTCCAAAGTGCGCATCTTCTTCCAA AGAAAGAAGCATCTTTTGAAGTGGAGGAGGTAGAAAACAAGGTAAAACATATACTTTTCGATATGAACATGCCCTGCGAGGACAATGACGATGTTGTTGA GCTTGTTGAGACCGAGAAAGCCGCCCAAGTTTCGAACTTTAGATGCGAGATCGACTTGAACTCTTGTGTAAGTGAAGATGAAGCTCCCGACTTTAAGAAG AAGCCGTTCACCGGAATAGACTTGGAAGCTCCGGTAGTTCCCGAGGCTGAAGAGGATGCTGGAATAGACTTGCTAGTGAATGTCCACGAAGAAGGACCTT CACTATCAAGGCATCGAGAAGCTGAAAGACCGCTCGATGAACTAACGAAAGTGGCAGCCGAGGCCATCATTGCGATCTCATCATCTGCTTTTTGTAGCAT TGCTGAAGTGTCTGTCACAAATCCTCTTCAATGGTTTGCAGACGTGATCTCGTCTTGCGGGGATTACTTGGAAAGCATAGTGGGACATGCCGTCTCATCG TCTTCCCACGAGGTGTTTGATTATTTCGAGTCGATGACACTGAAGCTGACCGAGACTAGAGAAGAAGATTACATGCCAAAGCCTCTAGTTCCCGAAGGCT TGATTAATCTCGACGAAACAGGAGCCACCACTAGCGTGGTGTTACCAACAACTCGAGGACGAAGGGGCAACACCCGGAGAGGGAGGCAGAAGAGGGATTT CCAAAGGGACATTCTTCCGGGGCTCGTTTCTCTCTCGAGGCACGAGGTCACCGAAGATATACAGACGTTCGGAGGGCTAATGAGGGCGACAGGTCATCTT ACATGGCAGTCCGGATTAGCGAGAAGGGGCTCGACAAGAAATGGTTGCGGGAGAGGAAGGAGGCGATCGGTGGTTAGTTCCCCCCCTCCTCCCCCTCTTG TGGATTTAAGTCCACCACCTCCTCCATTGATACAGCAACTGAATACTATTGAAGTAGGAATGGAGGATCGAAGCATCCGAGGTTGGGGTAAGACCACTAG GCGTCCACGTAGACAACGATGCCCTCCTGGTAACCTTCCAACCCTTCCTGACCATGTTAGAATTGTTTCAGGTATGACAGCAGTTGTACTTGCAAAGAAT ACAATGTCCAAGTGCTTGGTTGGAGACGAGTTAGTATCCGATTTCGTTAACGGGTTTTCTGGTCGAACCGTCAAGATCTCGAGGAAGGAATAG
AA sequence Show only first row Show all	>Lus10030419 pacid=23140543 polypeptide=Lus10030419 locus=Lus10030419.g ID=Lus10030419.BGIv1.0 annot-version=v1.0 MGTKVQCESYFPGHFQMRDISDDANSSSWPQYYGDNKTFTNGQYYNGNFLPRTMTERYPGYDKDLVKRTMLEHEATFRHQVCVPSSEFVSGKLHSFHLSD LENFAFQLYELHRLYRIQRDLMDEVKRKELYKIRMREVDASMPSSPSASHVTSEDARRRHIPGFPLGNSVCTRPSTSAIDNNTNSPLSSVMGSSTYTTSP LPFQNGTTSKELEILESRPTKVRRKMFDLRLPADEDIVTEEGRPLKGVHNLSGNVQHRNLNNTMKANCRDDVSLAESCPRGVRTSVADLNEPIVIEETNP SEHPFHGKIRGSELDRRQMSWKSNHGSDHKGPLPRRDFQANGNGNHQWLMKPTCEESLPSSSRSMQALFNRALEPHPPNFAIVDHKRNHHLSDSIDSSNS CHREAVIASSVSNPYPFAPDPSKSWSHSAHSVVHHPHLNSSATWSKSPQSSTTQSNGKLADRWNSNTISTSNQKFGSVMANRNGYQHNGISTGLNELQFS VPPRSYGQLNQINHGSRYMDLKPVKGVNLNVAISNSSTNKAGAQHGIEVIDLERKDDISNLSSLPWLRAEIDLNAGKSSFLGSSNHPVCHGNKKSASQST NPESSRNKEIDDSTGCNGKILGFPIFQSAHLLPKKEASFEVEEVENKVKHILFDMNMPCEDNDDVVELVETEKAAQVSNFRCEIDLNSCVSEDEAPDFKK KPFTGIDLEAPVVPEAEEDAGIDLLVNVHEEGPSLSRHREAERPLDELTKVAAEAIIAISSSAFCSIAEVSVTNPLQWFADVISSCGDYLESIVGHAVSS SSHEVFDYFESMTLKLTETREEDYMPKPLVPEGLINLDETGATTSVVLPTTRGRRGNTRRGRQKRDFQRDILPGLVSLSRHEVTEDIQTFGGLMRATGHL TWQSGLARRGSTRNGCGRGRRRSVVSSPPPPPLVDLSPPPPPLIQQLNTIEVGMEDRSIRGWGKTTRRPRRQRCPPGNLPTLPDHVRIVSGMTAVVLAKN TMSKCLVGDELVSDFVNGFSGRTVKISRKE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G13940			Plant protein of unknown funct...		Lus10030419 [exp]	0	1
AT1G29400		AML5	MEI2-like protein 5 (.1.2)		Lus10011968 [exp]	1.7	0.8918
AT4G36630		EMB2754	EMBRYO DEFECTIVE 2754, Vacuola...		Lus10014310 [exp]	4.0	0.8916
AT5G64220	CAMTA		Calmodulin-binding transcripti...		Lus10003405 [exp]	4.4	0.8976
AT2G15695			Protein of unknown function DU...		Lus10019874 [exp]	5.5	0.8834
AT5G38840	FHA		SMAD/FHA domain-containing pro...		Lus10005098 [exp]	5.7	0.8541
AT4G32350			Regulator of Vps4 activity in ...		Lus10023635 [exp]	6.2	0.8571
AT2G35800		SAMTL	S-adenosyl methionine transpor...		Lus10023493 [exp]	6.8	0.8968
AT1G06410		ATTPSA, ATTPS7	TREHALOSE -6-PHOSPHATASE SYNTH...		Lus10029258 [exp]	8.1	0.8458
AT2G47980		SCC3, ATSCC3	sister-chromatid cohesion prot...		Lus10023798 [exp]	8.7	0.8477
AT5G49820		RUS6, EMB1879	ROOT UV-B SENSITIVE 6, Protein...		Lus10038136 [exp]	9.9	0.8552

Compare expression of checked genes

Lus10030419 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.