Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G03350 259 / 1e-89 Protein of unknown function, DUF538 (.1) AT5G37070 176 / 6e-57 Protein of unknown function, DUF538 (.1) AT3G08890 174 / 9e-56 Protein of unknown function, DUF538 (.1.2) AT5G01610 162 / 2e-51 Protein of unknown function, DUF538 (.1) AT5G16380 63 / 2e-12 Protein of unknown function, DUF538 (.1) AT5G19860 61 / 9e-12 Protein of unknown function, DUF538 (.1) AT4G02360 58 / 8e-11 Protein of unknown function, DUF538 (.1) AT1G61667 54 / 1e-09 Protein of unknown function, DUF538 (.1) AT1G55265 50 / 7e-08 Protein of unknown function, DUF538 (.1) AT3G07470 49 / 2e-07 Protein of unknown function, DUF538 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026639 [exp] 361 / 9e-130 AT2G03350 262 / 1e-90 Protein of unknown function, DUF538 (.1) Lus10037126 [exp] 265 / 1e-91 AT2G03350 235 / 3e-80 Protein of unknown function, DUF538 (.1) Lus10036804 [exp] 248 / 6e-85 AT2G03350 224 / 9e-76 Protein of unknown function, DUF538 (.1) Lus10012232 [exp] 171 / 2e-54 AT3G08890 297 / 1e-104 Protein of unknown function, DUF538 (.1.2) Lus10002862 [exp] 169 / 7e-54 AT3G08890 299 / 2e-105 Protein of unknown function, DUF538 (.1.2) Lus10022674 [exp] 151 / 1e-46 AT3G08890 273 / 1e-94 Protein of unknown function, DUF538 (.1.2) Lus10012498 [exp] 124 / 5e-37 AT3G08890 214 / 1e-72 Protein of unknown function, DUF538 (.1.2) Lus10025861 [exp] 59 / 1e-10 AT3G07470 171 / 4e-54 Protein of unknown function, DUF538 (.1) Lus10019216 [exp] 56 / 9e-10 AT3G07470 185 / 5e-60 Protein of unknown function, DUF538 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G162400 [exp] 293 / 4e-103 AT2G03350 277 / 1e-96 Protein of unknown function, DUF538 (.1) Potri.008G092500 [exp] 292 / 1e-102 AT2G03350 281 / 4e-98 Protein of unknown function, DUF538 (.1) Potri.016G125300 [exp] 172 / 3e-55 AT3G08890 292 / 8e-103 Protein of unknown function, DUF538 (.1.2) Potri.006G104000 [exp] 169 / 8e-54 AT3G08890 296 / 1e-104 Protein of unknown function, DUF538 (.1.2) Potri.014G127500 [exp] 66 / 1e-13 AT4G02370 167 / 1e-53 Protein of unknown function, DUF538 (.1) Potri.003G217300 [exp] 64 / 4e-13 AT1G55265 139 / 2e-42 Protein of unknown function, DUF538 (.1) Potri.001G008240 [exp] 62 / 2e-12 AT1G55265 137 / 8e-42 Protein of unknown function, DUF538 (.1) Potri.001G008320 [exp] 62 / 4e-12 AT1G55265 135 / 4e-41 Protein of unknown function, DUF538 (.1) Potri.013G014600 [exp] 61 / 9e-12 AT1G02816 181 / 8e-59 Protein of unknown function, DUF538 (.1) Potri.014G177800 [exp] 52 / 1e-08 AT3G07470 192 / 3e-63 Protein of unknown function, DUF538 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04398 [flax] [poplar] DUF538 Protein of unknown function, DUF538
Representative CDS sequence Show only first row Show all	>Lus10030420 pacid=23140607 polypeptide=Lus10030420 locus=Lus10030420.g ID=Lus10030420.BGIv1.0 annot-version=v1.0 ATGGAGAAGGCACTCACTAAAGTTGGCAGCTTGAAGCTCGGCAATTCATGGATCTCCAAGAAAGCCAAGGAGGAACTCACCAATATCAGCGATGACATCT CTACTTTCTCCAACACTGTTGAAGAGAAGGCCAAATGGATCTTCAACAAGCTGAAAGGAAAGCCATTGAAGAGCTTGCCAGATCTGCTGAGAGAGTTCAA CTTACCACAGGGCCTCTTCCCACAGAACGTGACCTGCTATGAATTCGATGAGACCAAGGGGAAGCTGGTGGTGCACTTGCCTTCTGCGTGTGAGCTGACC TTCAAGGACTCATCCGTGATCAGATACTCGACGAGGGTGAAGGCGATTCTTACTCGGGGGAAGCTGAACAACATAGACGGAATGAAGACCAAGGTGATTG TTTGGGTCAAAGTCTCGAACGTGGCAGTCGAAGGGTTCAAGTCTGATAAAGTGTGGTTCACTGCTGCTGGTGTGAAGAAGTCTAGACCTAGGGTTCAGTA TGATGCCCTTCAGGCTGCTGTTAGGGTTGATGAATTCTGA
AA sequence Show only first row Show all	>Lus10030420 pacid=23140607 polypeptide=Lus10030420 locus=Lus10030420.g ID=Lus10030420.BGIv1.0 annot-version=v1.0 MEKALTKVGSLKLGNSWISKKAKEELTNISDDISTFSNTVEEKAKWIFNKLKGKPLKSLPDLLREFNLPQGLFPQNVTCYEFDETKGKLVVHLPSACELT FKDSSVIRYSTRVKAILTRGKLNNIDGMKTKVIVWVKVSNVAVEGFKSDKVWFTAAGVKKSRPRVQYDALQAAVRVDEF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G03350			Protein of unknown function, D...		Lus10030420 [exp]	0	1
AT4G09820	bHLH	BHLH42, TT8, bH...	TRANSPARENT TESTA 8, basic hel...		Lus10022032 [exp]	1.4	0.8121
AT4G25315			Expressed protein (.1.2)		Lus10014065 [exp]	1.4	0.7984
AT5G51840			unknown protein		Lus10031667 [exp]	3.6	0.7348
AT1G07780		TRP6, PAI1	TRANSIENT RECEPTOR POTENTIAL 6...		Lus10028971 [exp]	5.2	0.7844
AT5G13050		5-FCL	5-formyltetrahydrofolate cyclo...		Lus10010736 [exp]	6.0	0.7477
AT4G18650			transcription factor-related (...		Lus10029229 [exp]	9.5	0.7667
AT2G28790			Pathogenesis-related thaumatin...		Lus10016572 [exp]	11.7	0.7637
AT5G36230			ARM repeat superfamily protein...		Lus10029667 [exp]	12.4	0.7340
AT3G05640			Protein phosphatase 2C family ...		Lus10020671 [exp]	15.6	0.7453
AT5G66520			Tetratricopeptide repeat (TPR)...		Lus10017583 [exp]	18.5	0.7546

Compare expression of checked genes

Lus10030420 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.