Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G69390 249 / 9e-84 ARC12, ATMINE1 accumulation and replication of chloroplasts 12, homologue of bacterial MinE 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026638 [exp] 427 / 4e-154 AT1G69390 247 / 4e-83 accumulation and replication of chloroplasts 12, homologue of bacterial MinE 1 (.1) Lus10036802 [exp] 307 / 1e-106 AT1G69390 253 / 3e-85 accumulation and replication of chloroplasts 12, homologue of bacterial MinE 1 (.1) Lus10037128 [exp] 295 / 4e-102 AT1G69390 256 / 2e-86 accumulation and replication of chloroplasts 12, homologue of bacterial MinE 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G162600 [exp] 302 / 7e-105 AT1G69390 272 / 5e-93 accumulation and replication of chloroplasts 12, homologue of bacterial MinE 1 (.1) Potri.008G092300 [exp] 296 / 1e-102 AT1G69390 270 / 2e-92 accumulation and replication of chloroplasts 12, homologue of bacterial MinE 1 (.1) Potri.004G121000 [exp] 184 / 8e-59 AT1G69390 191 / 2e-61 accumulation and replication of chloroplasts 12, homologue of bacterial MinE 1 (.1) Potri.017G088401 [exp] 86 / 1e-21 AT1G69390 86 / 2e-22 accumulation and replication of chloroplasts 12, homologue of bacterial MinE 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03776 [flax] [poplar] MinE Septum formation topological specificity factor MinE
Representative CDS sequence Show only first row Show all	>Lus10030421 pacid=23140662 polypeptide=Lus10030421 locus=Lus10030421.g ID=Lus10030421.BGIv1.0 annot-version=v1.0 ATGGCGATCTCAGGAGATCTGAGTGTCTCTGCAGCATTGGCATCCTATCCTAAGCACCAGCCTCTCAGAAGCTTGCCTCTTTCATCGACATCAAAGGTGG ACTTCAACGCATTCCCCAGCGGAAGATCAGCAACCACCATCACAATTTCGAACCGTAAACCAACCCCTTCCATCCAACTATCCGCCGCCACCTCCAAAGA TTACGAGATGTCCTCCTCAGCCACCACATTCAACCAAGACGCCGAGACCTTCCTCCTCAACGCCATAAACATGAGCCTCCTCGAACGACTCACCTTAGCC TGGAAGCTAATCTTCCCATCACCCGCCAGACAAAAGACCTCCAACGCAAGGATAGCCAAGCAGCGCCTCAAGATGATCCTCTTCTCCGACCGGTGTGCAG TTAGCGACGAGGCCAAGAGGAAGATCGTCAACAACATCGTTCACGCCCTCTCCGAGTTCGTCGAGATCGAGTCCCAGGACAAAGTGCAGCTCAGTGTCAC TACCGACACCGACTTGGGGACGATGTACTCGGTTACGGTTCCCGTTCGAAGAGTGAAGGCGGAGTACCTGGAAATCGAGGATGTTGGATCGATTACTAAC ATCGAGTATAGAGAAACCGGACTGGATGATGATTCGGTCGATGTTACGTTCGACTTCTACATTCCGGATGAAAGGACTCGGTGA
AA sequence Show only first row Show all	>Lus10030421 pacid=23140662 polypeptide=Lus10030421 locus=Lus10030421.g ID=Lus10030421.BGIv1.0 annot-version=v1.0 MAISGDLSVSAALASYPKHQPLRSLPLSSTSKVDFNAFPSGRSATTITISNRKPTPSIQLSAATSKDYEMSSSATTFNQDAETFLLNAINMSLLERLTLA WKLIFPSPARQKTSNARIAKQRLKMILFSDRCAVSDEAKRKIVNNIVHALSEFVEIESQDKVQLSVTTDTDLGTMYSVTVPVRRVKAEYLEIEDVGSITN IEYRETGLDDDSVDVTFDFYIPDERTR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G69390		ARC12, ATMINE1	accumulation and replication o...		Lus10030421 [exp]	0	1
AT1G69390		ARC12, ATMINE1	accumulation and replication o...		Lus10026638 [exp]	1.4	0.8893
AT3G46630			Protein of unknown function (D...		Lus10018738 [exp]	8.1	0.8540
AT5G23140		NCLPP7, NCLPP2,...	nuclear-encoded CLP protease P...		Lus10013435 [exp]	10.6	0.8682
AT1G32360	C3HZnF		Zinc finger (CCCH-type) family...		Lus10000486 [exp]	16.0	0.7961
AT2G23820			Metal-dependent phosphohydrola...		Lus10015497 [exp]	20.8	0.8308
AT3G55140			Pectin lyase-like superfamily ...		Lus10030313 [exp]	24.0	0.8098
AT4G35000		APX3	ascorbate peroxidase 3 (.1)		Lus10019781 [exp]	24.8	0.8182
AT3G46630			Protein of unknown function (D...		Lus10024797 [exp]	26.0	0.8392
AT5G58250		EMB3143	EMBRYO DEFECTIVE 3143, unknown...		Lus10035110 [exp]	29.7	0.8380
AT1G03600		PSB27	photosystem II family protein ...		Lus10037438 [exp]	30.4	0.8304

Compare expression of checked genes

Lus10030421 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.