Plant FIBer expression Database

Lus10030423 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G46520 368 / 2e-117 cellular apoptosis susceptibility protein, putative / importin-alpha re-exporter, putative (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10026635
[exp]
560 / 0 AT2G46520 363 / 3e-113 cellular apoptosis susceptibility protein, putative / importin-alpha re-exporter, putative (.1)
Lus10005968
[exp]
467 / 3e-158 AT2G46520 1073 / 0.0 cellular apoptosis susceptibility protein, putative / importin-alpha re-exporter, putative (.1)
Lus10030241
[exp]
463 / 8e-154 AT2G46520 1438 / 0.0 cellular apoptosis susceptibility protein, putative / importin-alpha re-exporter, putative (.1)
Lus10030433
[exp]
390 / 8e-134 AT2G46520 212 / 5e-62 cellular apoptosis susceptibility protein, putative / importin-alpha re-exporter, putative (.1)
Lus10030434
[exp]
92 / 1e-19 AT2G46520 449 / 6e-149 cellular apoptosis susceptibility protein, putative / importin-alpha re-exporter, putative (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.014G100000
[exp]
374 / 1e-119 AT2G46520 1464 / 0.0 cellular apoptosis susceptibility protein, putative / importin-alpha re-exporter, putative (.1)
Potri.002G172700
[exp]
368 / 2e-117 AT2G46520 1421 / 0.0 cellular apoptosis susceptibility protein, putative / importin-alpha re-exporter, putative (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0020 TPR PF08506 Cse1 Cse1
CL0020 TPR PF03378 CAS_CSE1 CAS/CSE protein, C-terminus
Representative CDS sequence
>Lus10030423 pacid=23140765 polypeptide=Lus10030423 locus=Lus10030423.g ID=Lus10030423.BGIv1.0 annot-version=v1.0
ATGGCGGAGGAGTTGGAAGATAGTACGAGAAGGAGGAGGGTTGCTTGTAAGTTGCTCAAGGGGATTGCTGCAAATTATAAGGAGCAAGTGACTAGTATAG
TTTCTGCTCAGATACAAAATTTGTTGAACTCTTATGCTTTGGCTCCGGGGCTAGTTAAGAATGATGCTGCTGCTGGGGCATCATCAGATTTGGCTCCGGG
GCTGATGAACAACCTATTTAATGCATTGAAATTACCAGAATCTGAGGAGAATCAGTACATCATCAAGTGCATCATGCGGGTAATAGGGGTAGCAGAAACA
AACCGTGGTGATATGGCTTTTGCAAAAACCCCCCAAAAGAATCCTGCTTTCAACCACTATCTGTTTGAGTCGGTAGCTCTTCTTGTGAAGCGAGCATGTG
AGAGGGATAGAGCTCTGGTACCAACTTTTGAAGAAATATTACTCCCCAGTCTTGAGTTGATCTTGGAGGATGAATATGCGACAGAATTCTTGCCGTATGC
ATTTCAGCTCTTGGCCCAACTGGTCGACTTGAATGATCAGCAGCCGCCGCCTATTCCTCCTATTTACATGCAGATTTTCAATAAGCTCCTCGTCTCTCCT
CCTGAATCATGTTGGAATACAAGGTCAAATGTTCGTGAACTTGTACGTCTACTGCAGGCCTTGATTCAGAAGGCACCACATGAGCTCCTCCTCGATAAGG
TGGTTGGTATATTCAACCGGCTAATATCATCATCTTCTAGCTCCTCCGAGGAACAGGGGTTGCATCTTCTGGGCACTATTATATCGAATATCGAATTTGA
TGCCATCTCCCCCTACATGGTTCACATCTTGGCTGCCATATTCAGATGTCTCAAGGAGAAAGAAGAAGAAGGGTTATTATCACAAGGGCTCATGAATACG
TCTCTTGTGATTTTCATGTCACGGTATCTGATCAAGCATGATCCTGGAAACCTCATTGATTCAATGAATACTTCAGGTCAAGGGAACATCTTCATGACGA
TCCTGGACAAATGGTGGATAACGGATCTCTGGACGTTTGGGCGAGAGATTGAGGTTAAGTTAGCTGCTGTTGCATCGTGCAGACTTATCTGCGAATCTCC
TCTTCTTTTGGATCCAGCAGCTGCTAGTCACTGGGGGAAAATGCAAGACAGCATTGTCACTCTACTGTCAAGAAAGCCAGATGAAGATGATTATAAACTG
GAGTTTAACGTTCCGTTCAAAAAGAAGAGACTGCTGCTTGACATGGAGCCTGAATTTATGGACGGCGCATATACTGAACGGTTCGTCCCTCTTTACAATG
TTTGGAAGGAGGAAGATGACCCGTTGAAAGACGTTAGAGATCCAAAGCAGTTCCCAGTGAGTTGTTTGTCAAGGCTCACTGCATATTATCCTGGGAGGTT
CCAACAAATAATCAATCAGAATCTCCATTCAGAGAATCAAACAGCACTGCTCCAGCTTTGCAACACTTATAATTCTCCCATTCAATTTTATTCCTCCTAA
AA sequence
>Lus10030423 pacid=23140765 polypeptide=Lus10030423 locus=Lus10030423.g ID=Lus10030423.BGIv1.0 annot-version=v1.0
MAEELEDSTRRRRVACKLLKGIAANYKEQVTSIVSAQIQNLLNSYALAPGLVKNDAAAGASSDLAPGLMNNLFNALKLPESEENQYIIKCIMRVIGVAET
NRGDMAFAKTPQKNPAFNHYLFESVALLVKRACERDRALVPTFEEILLPSLELILEDEYATEFLPYAFQLLAQLVDLNDQQPPPIPPIYMQIFNKLLVSP
PESCWNTRSNVRELVRLLQALIQKAPHELLLDKVVGIFNRLISSSSSSSEEQGLHLLGTIISNIEFDAISPYMVHILAAIFRCLKEKEEEGLLSQGLMNT
SLVIFMSRYLIKHDPGNLIDSMNTSGQGNIFMTILDKWWITDLWTFGREIEVKLAAVASCRLICESPLLLDPAAASHWGKMQDSIVTLLSRKPDEDDYKL
EFNVPFKKKRLLLDMEPEFMDGAYTERFVPLYNVWKEEDDPLKDVRDPKQFPVSCLSRLTAYYPGRFQQIINQNLHSENQTALLQLCNTYNSPIQFYSS

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G46520 cellular apoptosis susceptibil... Lus10030423
[exp]
0 1
Lus10040028
[exp]
4.2 0.7229
AT5G12430 TPR16 tetratricopeptide repeat 16, H... Lus10005022
[exp]
6.6 0.7223
AT5G12430 TPR16 tetratricopeptide repeat 16, H... Lus10019041
[exp]
22.3 0.6851
AT1G22770 FB, GI gigantea protein (GI) (.1) Lus10028693
[exp]
57.9 0.6802
Lus10022149
[exp]
61.6 0.6485
AT5G42905 Polynucleotidyl transferase, r... Lus10005922
[exp]
64.3 0.6323
AT4G24690 AtNBR1 Arabidopsis thaliana next to B... Lus10019471
[exp]
65.7 0.6257
AT3G04240 SEC secret agent, Tetratricopeptid... Lus10003112
[exp]
68.4 0.6315
AT3G49060 U-box domain-containing protei... Lus10039245
[exp]
70.7 0.6442
AT2G12550 NUB1 homolog of human NUB1, ubiquit... Lus10039971
[exp]
71.0 0.6272

Lus10030423 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.