Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G13970 492 / 2e-171 Protein of unknown function (DUF1336) (.1) AT3G29180 421 / 1e-143 Protein of unknown function (DUF1336) (.1), Protein of unknown function (DUF1336) (.2) AT5G39430 402 / 4e-136 Protein of unknown function (DUF1336) (.1) AT1G59650 330 / 2e-108 CW14 Protein of unknown function (DUF1336) (.1) AT1G10410 325 / 3e-106 Protein of unknown function (DUF1336) (.1) AT5G25010 57 / 9e-09 Protein of unknown function (DUF1336) (.1) AT5G24990 44 / 0.0001 Protein of unknown function (DUF1336) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026633 [exp] 899 / 0 AT1G13970 504 / 4e-176 Protein of unknown function (DUF1336) (.1) Lus10037132 [exp] 677 / 0 AT3G29180 470 / 9e-163 Protein of unknown function (DUF1336) (.1), Protein of unknown function (DUF1336) (.2) Lus10036683 [exp] 315 / 2e-102 AT1G59650 603 / 0.0 Protein of unknown function (DUF1336) (.1) Lus10039463 [exp] 313 / 5e-101 AT1G59650 478 / 3e-165 Protein of unknown function (DUF1336) (.1) Lus10010740 [exp] 311 / 7e-101 AT1G59650 610 / 0.0 Protein of unknown function (DUF1336) (.1) Lus10005831 [exp] 308 / 3e-99 AT1G59650 471 / 1e-162 Protein of unknown function (DUF1336) (.1) Lus10000174 [exp] 256 / 4e-84 AT1G13970 224 / 2e-72 Protein of unknown function (DUF1336) (.1) Lus10036799 [exp] 260 / 2e-83 AT1G13970 181 / 7e-53 Protein of unknown function (DUF1336) (.1) Lus10019591 [exp] 61 / 1e-09 AT5G35180 931 / 0.0 Protein of unknown function (DUF1336) (.1), Protein of unknown function (DUF1336) (.2), Protein of unknown function (DUF1336) (.3), Protein of unknown function (DUF1336) (.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G163100 [exp] 549 / 0 AT1G13970 543 / 0.0 Protein of unknown function (DUF1336) (.1) Potri.017G088000 [exp] 419 / 2e-142 AT3G29180 615 / 0.0 Protein of unknown function (DUF1336) (.1), Protein of unknown function (DUF1336) (.2) Potri.017G074800 [exp] 331 / 6e-109 AT1G59650 472 / 6e-164 Protein of unknown function (DUF1336) (.1) Potri.008G190500 [exp] 333 / 7e-109 AT1G59650 579 / 0.0 Protein of unknown function (DUF1336) (.1) Potri.010G040100 [exp] 322 / 2e-104 AT1G59650 598 / 0.0 Protein of unknown function (DUF1336) (.1) Potri.018G113100 [exp] 48 / 1e-05 AT5G35180 1028 / 0.0 Protein of unknown function (DUF1336) (.1), Protein of unknown function (DUF1336) (.2), Protein of unknown function (DUF1336) (.3), Protein of unknown function (DUF1336) (.4) Potri.008G213000 [exp] 44 / 0.0003 AT4G19040 1017 / 0.0 ENHANCED DISEASE RESISTANCE 2 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07059 [flax] [poplar] DUF1336 Protein of unknown function (DUF1336)
Representative CDS sequence Show only first row Show all	>Lus10030425 pacid=23140673 polypeptide=Lus10030425 locus=Lus10030425.g ID=Lus10030425.BGIv1.0 annot-version=v1.0 ATGGGAGGATGTGTATCTACACCGGCTCACGGAAGTAGGGTGGGGCCAGAAGGAGGGAAGAGCAGGCGACGGCACAGATTTTCGAGGCGTTCGGCTAAGA TCGTCAGCGCAATGGCTGACGTGCCAGAGGCCATCAAGAGGCTGAGTAGTGCCGGAGGTGACTTCTCGATGAGTACTGAATTTGCCCGTGTCGATTTTGA GAATGGCTCGGCTACCACTTGTAGGAGGTCAGAAGTCTCCAACAAGAACTTCCATGTAACTCAGCTCCAATGGAACCAATGCCACATTGATCAAAATGGA ATAAGTCAAGAAGAAGTGTGGTTTGATTCGGTTAGTTTTATTGAGTCTGATTCGGATGACGACTTCATTAGCATGCACGAGGGATTCCCGGGCTTTAGCA ATGCAATGATGCCAAATGCACAGCTCCTTGAGGCCGCTGCTTCGAACTTTGGGGACAAGTGCAAGTACGAAGGGATTTACGAGAGCTACACAAAGATAGA CGAAGTACTAGAGGGCAAGGAGAAGAGGAAGTCGACCGTCATTAGGGTCGTAAAGAGGAAATCCGTCGACGGAAAGGCTCTCGCTAAAGGAGGTCCCGGG GCCGAGAAGATGTGCTATAGGCCTAAGGCAGGGAACTTGATCCCAAGAGAAGAGAAGCCGATTGTTGGGACATGGTCCGATGTCTGTCCTTCAGTTTTCA AGCTTCGCGGAGATAACTACTTCAGGCAAAAACAGGCAGCTCCAGAGATAAGCCCATATGTACCCTTTGGAGTTGACCTTTTCATGTGTCCAAGGAAAGT CAGCCACATTGCTCAACACCTTGACCTTCCTCAGGTTCAGCCTCATGACAAGGTTCCATCACTCTTGATCGTCAACATTCAGATTCCTATGTACCCTGTC GCGATGTTCAATGGCGACTGCGATGGAGAAGGCATGAGCCTTGTTCTCTACTTCAAGCTGTCTGAAAACTACGACACTGAAGTCTCTCCTCATTTCCAGG AGACCCTCAAGAAATTTGTGGATGATGAGATGGAGAAAGTCAAGGGCTTTGCCAAGGACTCCACAGTGCCATTCAGAGAAAGGCTGAAGCTTTTGGTTGG ACTTGTGAACCCTGAGGATCTGAACTTGAGCTCCACCGAGAAGAAGTTGATCCACGCTTATAACGAAAAGCCCGTGCTTTCTCGCCCTCAACACCAGTTC TTCAGCGGCCCTAACTACTTGGAAATCGACCTCGACATCCATTGGTTCAGCTACATTTCCAGGAAGGGCCTCGAGTCGTTCCGGGACAGGCTCAAGCTTG GCATTGCCAACGTTGGCTTAACCATCCAGGCACAGAAGCCGGAAGAGCTGCCTGAGCAAGTGCTGTGCTGTTTGAGGCTGAACAAGATCGATTTCGTGAA CCGCGGCCAGATCCCTACCTTGGTAACCAAGGAAGATTGA
AA sequence Show only first row Show all	>Lus10030425 pacid=23140673 polypeptide=Lus10030425 locus=Lus10030425.g ID=Lus10030425.BGIv1.0 annot-version=v1.0 MGGCVSTPAHGSRVGPEGGKSRRRHRFSRRSAKIVSAMADVPEAIKRLSSAGGDFSMSTEFARVDFENGSATTCRRSEVSNKNFHVTQLQWNQCHIDQNG ISQEEVWFDSVSFIESDSDDDFISMHEGFPGFSNAMMPNAQLLEAAASNFGDKCKYEGIYESYTKIDEVLEGKEKRKSTVIRVVKRKSVDGKALAKGGPG AEKMCYRPKAGNLIPREEKPIVGTWSDVCPSVFKLRGDNYFRQKQAAPEISPYVPFGVDLFMCPRKVSHIAQHLDLPQVQPHDKVPSLLIVNIQIPMYPV AMFNGDCDGEGMSLVLYFKLSENYDTEVSPHFQETLKKFVDDEMEKVKGFAKDSTVPFRERLKLLVGLVNPEDLNLSSTEKKLIHAYNEKPVLSRPQHQF FSGPNYLEIDLDIHWFSYISRKGLESFRDRLKLGIANVGLTIQAQKPEELPEQVLCCLRLNKIDFVNRGQIPTLVTKED

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G13970			Protein of unknown function (D...		Lus10030425 [exp]	0	1
AT2G46380			Protein of unknown function (D...		Lus10003905 [exp]	4.7	0.7863
AT5G07250		ATRBL3	RHOMBOID-like protein 3 (.1.2)		Lus10027436 [exp]	5.1	0.8289
AT3G16500	AUX_IAA	IAA26, PAP1	indole-3-acetic acid inducible...		Lus10037587 [exp]	6.7	0.8105
AT5G56150		UBC30	ubiquitin-conjugating enzyme 3...		Lus10016670 [exp]	9.5	0.8264
AT3G61920			unknown protein		Lus10002686 [exp]	9.5	0.8088
AT3G12620			Protein phosphatase 2C family ...		Lus10040346 [exp]	10.4	0.7717
AT4G38810			Calcium-binding EF-hand family...		Lus10007567 [exp]	11.6	0.7988
AT3G26880			Plant self-incompatibility pro...		Lus10025935 [exp]	12.0	0.7510
AT5G51570			SPFH/Band 7/PHB domain-contain...		Lus10015032 [exp]	15.2	0.8205
AT3G12620			Protein phosphatase 2C family ...		Lus10023470 [exp]	15.7	0.7816

Compare expression of checked genes

Lus10030425 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.