Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G69420 476 / 2e-163 DHHC-type zinc finger family protein (.1.2) AT4G15080 275 / 5e-84 DHHC-type zinc finger family protein (.1) AT2G33640 262 / 1e-80 DHHC-type zinc finger family protein (.1) AT3G22180 250 / 8e-75 DHHC-type zinc finger family protein (.1) AT4G01730 157 / 3e-42 DHHC-type zinc finger family protein (.1) AT3G26935 82 / 2e-16 DHHC-type zinc finger family protein (.1) AT3G48760 77 / 1e-14 DHHC-type zinc finger family protein (.1) AT4G24630 76 / 1e-14 DHHC-type zinc finger family protein (.1) AT5G41060 76 / 1e-14 DHHC-type zinc finger family protein (.1.2) AT5G50020 74 / 5e-14 DHHC-type zinc finger family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026632 [exp] 802 / 0 AT1G69420 588 / 0.0 DHHC-type zinc finger family protein (.1.2) Lus10036798 [exp] 573 / 0 AT1G69420 766 / 0.0 DHHC-type zinc finger family protein (.1.2) Lus10037133 [exp] 488 / 1e-169 AT1G69420 684 / 0.0 DHHC-type zinc finger family protein (.1.2) Lus10016036 [exp] 266 / 2e-81 AT2G33640 585 / 0.0 DHHC-type zinc finger family protein (.1) Lus10039043 [exp] 262 / 4e-79 AT4G15080 830 / 0.0 DHHC-type zinc finger family protein (.1) Lus10027339 [exp] 257 / 2e-77 AT4G15080 822 / 0.0 DHHC-type zinc finger family protein (.1) Lus10025157 [exp] 190 / 1e-53 AT2G33640 392 / 2e-130 DHHC-type zinc finger family protein (.1) Lus10038029 [exp] 170 / 2e-46 AT4G01730 515 / 4e-180 DHHC-type zinc finger family protein (.1) Lus10009971 [exp] 108 / 3e-25 AT4G01730 432 / 5e-148 DHHC-type zinc finger family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G163200 [exp] 530 / 0 AT1G69420 563 / 0.0 DHHC-type zinc finger family protein (.1.2) Potri.008G091700 [exp] 530 / 0 AT1G69420 626 / 0.0 DHHC-type zinc finger family protein (.1.2) Potri.002G006900 [exp] 287 / 3e-89 AT2G33640 553 / 0.0 DHHC-type zinc finger family protein (.1) Potri.005G254366 [exp] 236 / 4e-74 AT2G33640 395 / 1e-135 DHHC-type zinc finger family protein (.1) Potri.016G018400 [exp] 245 / 8e-73 AT4G15080 800 / 0.0 DHHC-type zinc finger family protein (.1) Potri.006G020800 [exp] 221 / 5e-64 AT4G15080 786 / 0.0 DHHC-type zinc finger family protein (.1) Potri.014G112000 [exp] 184 / 8e-52 AT4G01730 526 / 0.0 DHHC-type zinc finger family protein (.1) Potri.002G186800 [exp] 181 / 9e-51 AT4G01730 520 / 0.0 DHHC-type zinc finger family protein (.1) Potri.003G160600 [exp] 82 / 2e-16 AT3G26935 435 / 1e-150 DHHC-type zinc finger family protein (.1) Potri.001G070100 [exp] 82 / 2e-16 AT3G26935 435 / 1e-150 DHHC-type zinc finger family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01529 [flax] [poplar] DHHC DHHC palmitoyltransferase
Representative CDS sequence Show only first row Show all	>Lus10030426 pacid=23140707 polypeptide=Lus10030426 locus=Lus10030426.g ID=Lus10030426.BGIv1.0 annot-version=v1.0 ATGAGAAAGCATGGTTGGCAGCTTCCTTACCACCCTCTACAGGTGGTGGCTGTTGCTGTGTTTCTAGCTCTGGGTTTTGCCTTCTATGTCTTCTTTGCCC CCTTTGTTGGGAAGAAGATGTACCAGTACATTGCAATGGGTATCTACACTCCTCTGATCATGTCTGTTTTCGGCCTATATATCCGGTGTGCAGCTTCTGA TCCTGCAGATCCTGGAGTTTTCAGATCAAAGGACTCAAAATTCGGAACTGACAGGAAGAACCCGTCTTGCTTATCCTGGACTCGATCTTCTTGTGCTTTA GTATGCAATTCGAGCAATGATGAACGATCCGAGCAGACTGTGGAAGATGGCATGTTCTATTGTAGCTTGTGTGAAGTTGAGGTGTCCAAGTACAGCAAGC ATTGTAGAGTTTGCGATAAATGTGTCGATCGATTCGACCATCACTGCAGGTGGATTAATAACTGTATAGGAAAGAAGAACTACAGAAAGTTCTTCACCCT CATGGCATCTGCAATCCTACTGCTTATCTTCCAATGGGCAACCGGGATTCTCGTTCTTGCTCGTTGTTTCATCGAGAGGAAGCGATTTGTGGTCGAAATC TCCTCGAAGTTGGGTAGCAGCTTCTCTTTGGTACCATTTATAATGGTGGTGGCAGTATGCACTATTTTGGCAATGCTTGCAACTCTGCCATTAGCTCAGC TGTTCTTCTTCCACATCCTGCTCATTAAAAAGGGAATCAGCACTTATGATTACATAATCGCTTTAAGAGAGCAAGAACAGGATCAGCAGCAAGGAGAATT TGGTCAGCACAGTCCTCAAATGTCGCAAGTTAGCTCGGTTACAGGTCTAAGCAGTGTTAGTTCCTTTTCTACATTCCACCGGGCTGCCTGGTGTACGCCT CCTCGACTGTTTCTTGAAGATCAGTTTGATGTTGTACCCCCGGACAATGGATCCGTGAGTTCGTATGGAAAGAAGACATCAAAGAGAGAAGAACCGGTCA AGAAGAAGGCTGCTGTAAAGATCAGTCCTTGGACACTGGCAAAATTGAACGCGGAAGAGGTCTCGAAAGCTGCTGCTGAGGCCAGAAAGAAGTCTAGAAT CTTGTCGGAAAGAAGGTTTCCAGCTGGCTTGCAGCAGAAGGAAGAGCCTTTAACTGCTGGTTTTCCAGTAACTTCCTCCTCAAGTTTCGCCCCTCTTCAG CTCGAGGCACGGAGTGCTTTCCAACCAACTGTTGGACCGAGTTCTCCTGAAAGCAGTGTCGTTGTGGATTCCCCTGATGTTTACCTATCTGCGTCAGGAG CGGACGATTCTCGGAGGCTTACATCGAACGAAGTGAATTTCCCACTCTCGAGGTCTTCTACTAGTGATGGGTATGAAGCATCTGGTGGTGAAGATAGTGA TCACAGGGTTGTTCATACTACTAATAGGATTGTTCAGAGATCAACTGACTGGAGCAACCTTATGTTAATGGCGAGTCAGGACGAAGAAGGATTTCGGAGA CTGAAAGCATCAGCATCAAGCTCGAACAGTGGAACGCTATAA
AA sequence Show only first row Show all	>Lus10030426 pacid=23140707 polypeptide=Lus10030426 locus=Lus10030426.g ID=Lus10030426.BGIv1.0 annot-version=v1.0 MRKHGWQLPYHPLQVVAVAVFLALGFAFYVFFAPFVGKKMYQYIAMGIYTPLIMSVFGLYIRCAASDPADPGVFRSKDSKFGTDRKNPSCLSWTRSSCAL VCNSSNDERSEQTVEDGMFYCSLCEVEVSKYSKHCRVCDKCVDRFDHHCRWINNCIGKKNYRKFFTLMASAILLLIFQWATGILVLARCFIERKRFVVEI SSKLGSSFSLVPFIMVVAVCTILAMLATLPLAQLFFFHILLIKKGISTYDYIIALREQEQDQQQGEFGQHSPQMSQVSSVTGLSSVSSFSTFHRAAWCTP PRLFLEDQFDVVPPDNGSVSSYGKKTSKREEPVKKKAAVKISPWTLAKLNAEEVSKAAAEARKKSRILSERRFPAGLQQKEEPLTAGFPVTSSSSFAPLQ LEARSAFQPTVGPSSPESSVVVDSPDVYLSASGADDSRRLTSNEVNFPLSRSSTSDGYEASGGEDSDHRVVHTTNRIVQRSTDWSNLMLMASQDEEGFRR LKASASSSNSGTL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G69420			DHHC-type zinc finger family p...		Lus10030426 [exp]	0	1
AT1G69420			DHHC-type zinc finger family p...		Lus10026632 [exp]	1.0	0.8778
AT2G03500	GARP		Homeodomain-like superfamily p...		Lus10020995 [exp]	3.2	0.8016
AT2G44220			Protein of Unknown Function (D...		Lus10036985 [exp]	4.6	0.7601
AT5G65980			Auxin efflux carrier family pr...		Lus10035978 [exp]	27.5	0.7252
AT5G55950			Nucleotide/sugar transporter f...		Lus10016648 [exp]	28.7	0.7881
AT3G28420			Putative membrane lipoprotein ...		Lus10005837 [exp]	29.7	0.7769
AT4G34500			Protein kinase superfamily pro...		Lus10023574 [exp]	32.2	0.7617
AT5G48740			Leucine-rich repeat protein ki...		Lus10038172 [exp]	42.4	0.7592
AT1G76340		GONST3	golgi nucleotide sugar transpo...		Lus10034672 [exp]	44.1	0.7352
AT2G34710	HD	ATHB14, PHB-1D,...	PHABULOSA 1D, PHABULOSA, ARABI...		Lus10038449 [exp]	44.6	0.7255

Compare expression of checked genes

Lus10030426 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.