Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G11810 72 / 4e-14 unknown protein AT2G03330 53 / 7e-08 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036797 [exp] 94 / 9e-22 AT3G11810 212 / 2e-66 unknown protein Lus10037134 [exp] 63 / 1e-11 AT3G11810 159 / 1e-47 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G091600 [exp] 63 / 4e-11 AT3G11810 235 / 3e-75 unknown protein Potri.010G163300 [exp] 57 / 5e-09 AT3G11810 234 / 1e-74 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10030427 pacid=23140752 polypeptide=Lus10030427 locus=Lus10030427.g ID=Lus10030427.BGIv1.0 annot-version=v1.0 ATGTCGTCGCCATCTCCGCCGCGGGACCTCTCATCCGTGGCGTCGGAAACCAAGCGCATCATCGCCGCTCACTCGCTCCATTTCACCGCTCTCTCCCTCC TCTTCCTACTCCCCATCTCTCTCCTCGCAATTGCATATTCCGTCCTTCTCCACCAAAGCCCCGACGGCGGCGCCGCCGCCGCCGGAATGCTCGTGGCCGC CTTTTCCGCCTCCATTGTCTCCTTCGCGTTTGAAATGTTCGCGGTCGGATCCATCACCGACAGCGCCATCCAAGCCTTCCACGGCCGGCCGGTAAAGCCA GTCGCCGCCGCGGTCAAGTCAACTTTCCGTTCCTTCTTCCTCCGCCTCTCCCTAACCCAGTTCATCGTCAACCTAGCTGTCTGGATCGTCTCAATCGTTC TCAGCTCTTTGGTCGGCCTTGCAATCAACGGTCTGGCAATCGATCCGGACTCTCCGTACTTAATCGCCGTCATGGCGATTCACTCGATGGTCCTGATCTC GATCGGACTCTCTATCCGGACAAAATGGGCTCTGGCGCCGGCAATCGTCGTCATGGAATCCGAATTCGGTGTTTCGGCGTTGAAGCAGAGCAGCCACCTT GTGAAGGCGAAGTGGCCGGCGGTTTTCTGCTTCGTTCTATCGAATGCAATCGTAGTGTTACTTTTGGATCTCACCTGCTCCACCGCCGCCACGAAGCTTG CCGACGGCGGATGGAAGAACATTTTGTTGTTCTTTGCTCTGTCTACATTGACTTTGACTATCAGGACTCTGTTCTTGCTCTCCTTCTTCGTAGGAGAAAC TTTCCTGTATCTCTACTGCAAGGCTGCTCGTGGGGAAGAGCTTGCTTCGGAGATCGCACCTCTCATTGCTCCATCGACCTAG
AA sequence Show only first row Show all	>Lus10030427 pacid=23140752 polypeptide=Lus10030427 locus=Lus10030427.g ID=Lus10030427.BGIv1.0 annot-version=v1.0 MSSPSPPRDLSSVASETKRIIAAHSLHFTALSLLFLLPISLLAIAYSVLLHQSPDGGAAAAGMLVAAFSASIVSFAFEMFAVGSITDSAIQAFHGRPVKP VAAAVKSTFRSFFLRLSLTQFIVNLAVWIVSIVLSSLVGLAINGLAIDPDSPYLIAVMAIHSMVLISIGLSIRTKWALAPAIVVMESEFGVSALKQSSHL VKAKWPAVFCFVLSNAIVVLLLDLTCSTAATKLADGGWKNILLFFALSTLTLTIRTLFLLSFFVGETFLYLYCKAARGEELASEIAPLIAPST

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G11810			unknown protein		Lus10030427 [exp]	0	1
					Lus10033372 [exp]	1.7	0.9156
AT4G27595			Plant protein of unknown funct...		Lus10042237 [exp]	2.0	0.8601
AT5G52450			MATE efflux family protein (.1...		Lus10019492 [exp]	6.1	0.8065
AT1G66950		ABCG39, PDR11, ...	ATP-binding cassette G39, plei...		Lus10014384 [exp]	12.2	0.8698
AT5G17680			disease resistance protein (TI...		Lus10038249 [exp]	22.2	0.8384
AT1G75710	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10024333 [exp]	22.8	0.8443
AT2G38290		AMT2;1, ATAMT2	AMMONIUM TRANSPORTER 2;1, ammo...		Lus10012240 [exp]	25.3	0.7485
AT5G10830			S-adenosyl-L-methionine-depend...		Lus10024476 [exp]	26.2	0.8625
AT4G37370		CYP81D8	"cytochrome P450, family 81, s...		Lus10032857 [exp]	26.4	0.8485
AT3G02645			Plant protein of unknown funct...		Lus10019721 [exp]	28.5	0.8509

Compare expression of checked genes

Lus10030427 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.