Plant FIBer expression Database

Lus10030428 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G26660 150 / 4e-47 Prefoldin chaperone subunit family protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10026631
[exp]
263 / 6e-92 AT1G26660 150 / 3e-47 Prefoldin chaperone subunit family protein (.1.2)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G091400
[exp]
229 / 1e-78 AT1G26660 169 / 1e-54 Prefoldin chaperone subunit family protein (.1.2)
Potri.010G163600
[exp]
0 / 1 AT1G26660 0 / 1 Prefoldin chaperone subunit family protein (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0200 Prefoldin PF02996 Prefoldin Prefoldin subunit
Representative CDS sequence
>Lus10030428 pacid=23140697 polypeptide=Lus10030428 locus=Lus10030428.g ID=Lus10030428.BGIv1.0 annot-version=v1.0
ATGGACAAGCAACGGCAAGATAAGATTCAGAAGTTCGAGGAATTCGTCGACGGCCGATTGAAGCCTGATCTTGTGAAGGCCATCGGTGAAAGGGATAAGG
TCTTTGAACAGCAGAAGATTTTCTCGGATTTGAAGAGAAACATTGAGAATTTGGAAAAGAACAGCGTCACGAGTCTAAGGACATTGGTCGACATTGGCTC
TGAAGTTTACATGCAAGCAGATGTGGCGGATACGCAGCGCATTTTTGTGGACGTTGGGCTTGGATTCCATGTCGAGTTCACCTGGTCAGAGGCTCTGAAC
TATATCTCGTTACGGGAGGAGAAGATTAACAGGCAAATAGAGGAGTATACGAGGCAGATCGCATCAATCAAGACACAGATCAAGACTGTTATTGAAGGCA
TTCGAGAGTTGCTAGAACTTCCAGCAGAGAAGCTTCCGCCGCAACGTGTCTTCTAA
AA sequence
>Lus10030428 pacid=23140697 polypeptide=Lus10030428 locus=Lus10030428.g ID=Lus10030428.BGIv1.0 annot-version=v1.0
MDKQRQDKIQKFEEFVDGRLKPDLVKAIGERDKVFEQQKIFSDLKRNIENLEKNSVTSLRTLVDIGSEVYMQADVADTQRIFVDVGLGFHVEFTWSEALN
YISLREEKINRQIEEYTRQIASIKTQIKTVIEGIRELLELPAEKLPPQRVF

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G26660 Prefoldin chaperone subunit fa... Lus10030428
[exp]
0 1
AT1G18440 Peptidyl-tRNA hydrolase family... Lus10032480
[exp]
1.7 0.8376
AT4G21800 QQT2 quatre-quart2, P-loop containi... Lus10019602
[exp]
10.3 0.8170
AT3G08000 RNA-binding (RRM/RBD/RNP motif... Lus10031534
[exp]
11.4 0.7954
AT4G22380 Ribosomal protein L7Ae/L30e/S1... Lus10015295
[exp]
12.0 0.7800
AT2G01640 unknown protein Lus10002816
[exp]
13.0 0.8021
AT5G48030 GFA2 gametophytic factor 2 (.1) Lus10027634
[exp]
18.7 0.7717
AT4G38840 SAUR-like auxin-responsive pro... Lus10032173
[exp]
24.0 0.7600
AT3G11500 Small nuclear ribonucleoprotei... Lus10017019
[exp]
25.1 0.8004
AT1G10890 unknown protein Lus10043141
[exp]
25.8 0.7892
AT3G57360 unknown protein Lus10032322
[exp]
27.6 0.7070

Lus10030428 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.