Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G28120 410 / 5e-145 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026630 [exp] 559 / 0 AT1G28120 414 / 9e-147 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G162600 [exp] 428 / 2e-152 AT1G28120 436 / 2e-155 unknown protein Potri.001G067400 [exp] 424 / 4e-151 AT1G28120 431 / 1e-153 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [flax] [poplar] Peptidase_CA PF10275 [flax] [poplar] Peptidase_C65 Peptidase C65 Otubain
Representative CDS sequence Show only first row Show all	>Lus10030429 pacid=23140619 polypeptide=Lus10030429 locus=Lus10030429.g ID=Lus10030429.BGIv1.0 annot-version=v1.0 ATGCAGAACGAAAATCAGCTGGACGATGTCTCACTGCAGTCCTCATCCGCCGCGGAGAACTCCTGGTCGGACGTAGCCGCCTCCGTCGCCGACGAAGACA TCATGCAGCAGCACTCCGCCATTCGAGCAGCTGAAGCAAACAAGCTTCCGTTCGTCGGCGATAGGGAGCCACTTTCAGCTTTGGCAGCCGAGTACCAGTC CGGCAATGTTATCCTGCAGCAGAAGATACAGATTCTCTCCGATCAGTACAATGCCATCAGGCGGACTCGTGGAGATGGCAATTGCTTCTTCCGTAGCTTC ATGTTTGCCTACCTTGAGCATATTCTTCAAAGCCAGGATCGTAAAGAAGCTGATCGTGTGAAAGTGAACGTTGAAGAATGCAGGAAGACTCTTCAATCGT TGGGATACGCTGATTTCACGTTTGAGGACTTCTTTGCGCTGTTCCTTGAGCAAGTGGACAGTGTTCTTGAAGGAAACGCCGATTCAATAAGCCATGATGA GCTTGTCACCAGAAGTAGAGATCAGTCTGTATCAGATTACATTGTAATGTTCTTTAGGTTCGTAACCTCTGGCGAGATAAGAAAGCGCTCTGCATTCTTC GAACCGTTCATCTTCGGTTTAACCAATGCCACAGTAGAGCAGTTTTGCAAGTCATCAGTGGAGCCTATGGGTGAAGAGAGCGATCACGTTCACATCACCG CGCTATCAGACGCCCTAGGAGTGCCAATTCGAGTTGTGTACCTAGACCGCAGCTCCGACGAAAACGGCAGAGTTGCTGTGAATCGTCACGATTTCATACC TGCTCGTGCAGAAGAAGCTGCTAGTGATGACACTACTAGTAAGACTGCAGCCGAGCCCTTCATCACTCTGCTCTACCGCCCCGGTCACTACGACATCCTC TACCCGAAGTGA
AA sequence Show only first row Show all	>Lus10030429 pacid=23140619 polypeptide=Lus10030429 locus=Lus10030429.g ID=Lus10030429.BGIv1.0 annot-version=v1.0 MQNENQLDDVSLQSSSAAENSWSDVAASVADEDIMQQHSAIRAAEANKLPFVGDREPLSALAAEYQSGNVILQQKIQILSDQYNAIRRTRGDGNCFFRSF MFAYLEHILQSQDRKEADRVKVNVEECRKTLQSLGYADFTFEDFFALFLEQVDSVLEGNADSISHDELVTRSRDQSVSDYIVMFFRFVTSGEIRKRSAFF EPFIFGLTNATVEQFCKSSVEPMGEESDHVHITALSDALGVPIRVVYLDRSSDENGRVAVNRHDFIPARAEEAASDDTTSKTAAEPFITLLYRPGHYDIL YPK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G28120			unknown protein		Lus10030429 [exp]	0	1
AT1G61150			LisH and RanBPM domains contai...		Lus10018464 [exp]	1.0	0.9261
AT2G19690		PLA2-BETA	phospholipase A2-beta (.1.2)		Lus10028189 [exp]	1.4	0.8737
AT2G32600			hydroxyproline-rich glycoprote...		Lus10022607 [exp]	3.0	0.8580
AT5G01090			Concanavalin A-like lectin fam...		Lus10017194 [exp]	3.7	0.8458
AT4G12340			copper ion binding (.1)		Lus10032225 [exp]	6.6	0.8527
AT2G32600			hydroxyproline-rich glycoprote...		Lus10021506 [exp]	7.7	0.8461
AT5G64080		AtXYP1	xylogen protein 1, Bifunctiona...		Lus10021604 [exp]	7.9	0.8386
AT4G12340			copper ion binding (.1)		Lus10024588 [exp]	9.8	0.8459
AT1G52530			unknown protein		Lus10003678 [exp]	10.4	0.8324
AT2G26110			Protein of unknown function (D...		Lus10024988 [exp]	11.0	0.8402

Compare expression of checked genes

Lus10030429 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.