Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G69450 816 / 0 Early-responsive to dehydration stress protein (ERD4) (.1), Early-responsive to dehydration stress protein (ERD4) (.2) AT3G01100 766 / 0 ATHYP1, HYP1 ARABIDOPSIS THALIANA HYPOTHETICAL PROTEIN 1, hypothetical protein 1 (.1.2) AT1G58520 481 / 2e-160 RXW8 lipases;hydrolases, acting on ester bonds (.1.2.3) AT1G10090 477 / 1e-158 Early-responsive to dehydration stress protein (ERD4) (.1) AT1G11960 393 / 5e-126 ERD (early-responsive to dehydration stress) family protein (.1) AT3G21620 389 / 1e-124 ERD (early-responsive to dehydration stress) family protein (.1) AT4G22120 385 / 3e-123 ERD (early-responsive to dehydration stress) family protein AT4G02900 377 / 4e-120 ERD (early-responsive to dehydration stress) family protein (.1) AT4G04340 376 / 1e-119 ERD (early-responsive to dehydration stress) family protein (.1), ERD (early-responsive to dehydration stress) family protein (.2), ERD (early-responsive to dehydration stress) family protein (.3) AT1G32090 369 / 9e-117 early-responsive to dehydration stress protein (ERD4) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037139 [exp] 1074 / 0 AT1G69450 890 / 0.0 Early-responsive to dehydration stress protein (ERD4) (.1), Early-responsive to dehydration stress protein (ERD4) (.2) Lus10005223 [exp] 730 / 0 AT3G01100 895 / 0.0 ARABIDOPSIS THALIANA HYPOTHETICAL PROTEIN 1, hypothetical protein 1 (.1.2) Lus10004597 [exp] 511 / 5e-172 AT1G58520 845 / 0.0 lipases;hydrolases, acting on ester bonds (.1.2.3) Lus10004550 [exp] 506 / 3e-170 AT1G58520 842 / 0.0 lipases;hydrolases, acting on ester bonds (.1.2.3) Lus10036791 [exp] 489 / 3e-164 AT1G69450 426 / 7e-140 Early-responsive to dehydration stress protein (ERD4) (.1), Early-responsive to dehydration stress protein (ERD4) (.2) Lus10010365 [exp] 454 / 2e-150 AT1G58520 800 / 0.0 lipases;hydrolases, acting on ester bonds (.1.2.3) Lus10035300 [exp] 403 / 3e-130 AT3G21620 1146 / 0.0 ERD (early-responsive to dehydration stress) family protein (.1) Lus10030024 [exp] 402 / 1e-129 AT3G21620 1147 / 0.0 ERD (early-responsive to dehydration stress) family protein (.1) Lus10002133 [exp] 394 / 4e-126 AT1G32090 1136 / 0.0 early-responsive to dehydration stress protein (ERD4) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G091200 [exp] 948 / 0 AT1G69450 872 / 0.0 Early-responsive to dehydration stress protein (ERD4) (.1), Early-responsive to dehydration stress protein (ERD4) (.2) Potri.010G164100 [exp] 935 / 0 AT1G69450 844 / 0.0 Early-responsive to dehydration stress protein (ERD4) (.1), Early-responsive to dehydration stress protein (ERD4) (.2) Potri.004G115800 [exp] 797 / 0 AT3G01100 866 / 0.0 ARABIDOPSIS THALIANA HYPOTHETICAL PROTEIN 1, hypothetical protein 1 (.1.2) Potri.002G113800 [exp] 514 / 2e-173 AT1G58520 827 / 0.0 lipases;hydrolases, acting on ester bonds (.1.2.3) Potri.003G200900 [exp] 387 / 9e-125 AT3G54510 886 / 0.0 Early-responsive to dehydration stress protein (ERD4) (.1), Early-responsive to dehydration stress protein (ERD4) (.2) Potri.001G133800 [exp] 388 / 9e-124 AT1G32090 1061 / 0.0 early-responsive to dehydration stress protein (ERD4) (.1) Potri.014G156100 [exp] 380 / 2e-121 AT3G21620 1104 / 0.0 ERD (early-responsive to dehydration stress) family protein (.1) Potri.002G226800 [exp] 375 / 2e-119 AT3G21620 1105 / 0.0 ERD (early-responsive to dehydration stress) family protein (.1) Potri.003G099800 [exp] 374 / 3e-118 AT1G32090 1094 / 0.0 early-responsive to dehydration stress protein (ERD4) (.1) Potri.011G009900 [exp] 370 / 3e-117 AT4G22120 1142 / 0.0 ERD (early-responsive to dehydration stress) family protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0416 [flax] [poplar] Anoctamin-like PF02714 [flax] [poplar] RSN1_7TM Calcium-dependent channel, 7TM region, putative phosphate
Representative CDS sequence Show only first row Show all	>Lus10030431 pacid=23140576 polypeptide=Lus10030431 locus=Lus10030431.g ID=Lus10030431.BGIv1.0 annot-version=v1.0 ATGCGGGTCTCGGCGCTTTTGACTTCGTTGGGGATAAATTCTGGTCTATGCATTCTGTTCTTCGCATCATACTCTGTGTTGAGGAAACAACCGAGTAACT ATGGAGTGTACATCCCTCGCCTTCTCGCTGAAGGGAGTTCTGGACGAGATAGTAGTTTCAAACTGCAGAGGCTTATACCGTCAGCTGGTTGGGTTGCAAG GGCCTGGAGGCTAACTGAAGATGATATAGTATCATACAATGGATTGGATGCTTTTGTGTTCATGCGAGTCATAACGTTTTGTTTAAAAGTATTTGCTTTT GCTGGAGTGATTGGGATCTTTGTTCTTCTTCCGGTGAACAGTATGGGTACTCAGCTTCATGAATTTGACTTCGTTGATATAGCAAACAACTCTTTGGATG TCTTTACAATTTCAAATGTAAATAACGGCTCAGAAAGGTTGTGGATTCATTTCTCTGCTGTCTACATCATGACAATCTTCGTTTGTTGTCTGCTTTTTTA TGAATACAAGTATATATCCTTGAAAAGGATTGCTTATTTTCATTCTTCAGATCCTCAGCCACATCAGTTCACCATCTTAGTGAGCAACATCCCTGTCTCT AGAGACAGCAGCATCAGTGAGACTGTTCAGAGATTCTTCAAAGAGAATCACCCTACTACATATCTGTCCCATGTGGTTATTCGGCGAGCTAGCAAAATAC GAAATTTCGCTAATAAAGCAAAAAGACTATATAACTGGGCCATTAATATACGATCGAGTTCCTCGCATGATCAGCATCTCTTTACATTACCATCAGAGAA GGTTGATTCTCTGGATCACTATCAGAAGCGGTTAAGGAACCTTGAGCCAAACGGGAGATTAGAACAACAGCCGATGTCAATTGAAAAGGATACTCGAACT GCTTTTGTGTCATTCCGAACTCGATACGGTGCTGCCACTGCTCTCTGTATGCAACAATCTGTCAACCCCATACATTGGATTACGGAAGAAGCCCCCGAAC CTGACGATATCTATTGGCCTTTCTTTACATCAACGTTCATGCAAAGATGGACATCTAAGCTTGTGATTGTGGTTGTCTGTGTTCTCCTTACGATTCTCTT CCTTATTCCCGTGATATTGGTACAAGGTCTTACAAACCTAAGTCAATTGGAGGCTTGGTTTCCATTTCTGAAGAGCATTCTCACCCGGAAATTCATTAGC CAGGTAATTACAGGCTATCTTCCCAGTCTTATACTACAGTTGTTTCTCAAGATCGTGCCTCCGATTATGTGGTTCCTTTCCTCCATTCAAGGACACATTT CTCTTAGCGAGATAGAGAAGAGTGCATGTGACAAAGTGATATGGTTCACAGTCTGGAATGTCTTCTTTGCAACTGTGTTTTCTGGGTCGGTTTTCTATCA GCTCTCCATCGTTCTCGACCCCAAGAGCATCCCCGAAAAGCTGGCTATTTCAGTTCCAGCTCAGGAATCATTCTTCATTGCTTATGTCGTCACGACTGGA TGGGCAGGCATATCATCGGAACTATTCCGCGTAATTCCATTCATCCGCTGCCTAATACTCAAATGCTTCCGTAGGAGTACTGATGATGAGGATCCTGAAG TTCCCTCTATCTGTTTCCATAGAGACCTTCCGAAGATACTGTTCTTCGGACTGCTTGGCATCACGTACTTCTTCCTAGCCCCGTTAATCCTACCCTTCCT CCTGGTGTATTTCTGCATGGTGTACATCATCTTCCGCCACCAGTTCATCAATGTGTATGCACCGAAGCACGAAACAGCGGGAAGGTTCTGGCCAATGGTA CACAACACGATGATCTTCTCCTTGGTTCTCATGCATGCAATTGCAGTTGGAATTTTCACACTGAAGAATGTGTCTTGGGCATCCACCTTAATGTTCCCGC TTCCAGCCCTCACGCTTCTCTTCAACCAGTACTGTCGTAAACGCTTCCTACCATTGTTCGCTGCCTACCCTGCCGAGGTTTTGTTGAGGAAGGACAGAAC TGACCATAATAACGGTTCGATGTCCGAGTTCCACAATAAACTGGTCTCTGCCTACGAGGACCCATCTTTGGTGCCGATTGATTACTCCACCGAGAGTCTT AATCAACCGTTGCTGTCTCCCGATACAGCTTAA
AA sequence Show only first row Show all	>Lus10030431 pacid=23140576 polypeptide=Lus10030431 locus=Lus10030431.g ID=Lus10030431.BGIv1.0 annot-version=v1.0 MRVSALLTSLGINSGLCILFFASYSVLRKQPSNYGVYIPRLLAEGSSGRDSSFKLQRLIPSAGWVARAWRLTEDDIVSYNGLDAFVFMRVITFCLKVFAF AGVIGIFVLLPVNSMGTQLHEFDFVDIANNSLDVFTISNVNNGSERLWIHFSAVYIMTIFVCCLLFYEYKYISLKRIAYFHSSDPQPHQFTILVSNIPVS RDSSISETVQRFFKENHPTTYLSHVVIRRASKIRNFANKAKRLYNWAINIRSSSSHDQHLFTLPSEKVDSLDHYQKRLRNLEPNGRLEQQPMSIEKDTRT AFVSFRTRYGAATALCMQQSVNPIHWITEEAPEPDDIYWPFFTSTFMQRWTSKLVIVVVCVLLTILFLIPVILVQGLTNLSQLEAWFPFLKSILTRKFIS QVITGYLPSLILQLFLKIVPPIMWFLSSIQGHISLSEIEKSACDKVIWFTVWNVFFATVFSGSVFYQLSIVLDPKSIPEKLAISVPAQESFFIAYVVTTG WAGISSELFRVIPFIRCLILKCFRRSTDDEDPEVPSICFHRDLPKILFFGLLGITYFFLAPLILPFLLVYFCMVYIIFRHQFINVYAPKHETAGRFWPMV HNTMIFSLVLMHAIAVGIFTLKNVSWASTLMFPLPALTLLFNQYCRKRFLPLFAAYPAEVLLRKDRTDHNNGSMSEFHNKLVSAYEDPSLVPIDYSTESL NQPLLSPDTA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G69450			Early-responsive to dehydratio...		Lus10030431 [exp]	0	1
AT5G67030		NPQ2, LOS6, IBS...	NON-PHOTOCHEMICAL QUENCHING 2,...		Lus10019342 [exp]	1.4	0.9208
AT4G18810			NAD(P)-binding Rossmann-fold s...		Lus10007308 [exp]	3.2	0.9193
AT4G18130		PHYE	phytochrome E (.1)		Lus10011967 [exp]	4.9	0.8872
AT5G67030		NPQ2, LOS6, IBS...	NON-PHOTOCHEMICAL QUENCHING 2,...		Lus10009359 [exp]	5.5	0.9098
AT5G19500			Tryptophan/tyrosine permease (...		Lus10036527 [exp]	6.2	0.8677
AT2G41040			S-adenosyl-L-methionine-depend...		Lus10008815 [exp]	8.0	0.9036
AT3G04870		SPC1, PDE181, Z...	SPONTANEOUS CELL DEATH 1, PIGM...		Lus10015935 [exp]	9.0	0.8775
AT3G19490		ATNHD1	ARABIDOPSIS THALIANA NA/H ANTI...		Lus10014094 [exp]	9.5	0.8916
AT2G16430		ATPAP10, PAP10	purple acid phosphatase 10 (.1...		Lus10041959 [exp]	10.1	0.8629
AT4G39210		APL3	Glucose-1-phosphate adenylyltr...		Lus10023553 [exp]	11.0	0.8637

Compare expression of checked genes

Lus10030431 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.