Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G13980 2328 / 0 VAN7, EMB30, GN VASCULAR NETWORK 7, GNOM, EMBRYO DEFECTIVE 30, sec7 domain-containing protein (.1.2) AT5G39500 1751 / 0 GNL1, ERMO1 ENDOPLASMIC RETICULUM MORPHOLOGY 1, GNOM-like 1 (.1) AT5G19610 1062 / 0 GNL2 GNOM-like 2 (.1) AT1G01960 312 / 2e-86 EDA10 embryo sac development arrest 10, SEC7-like guanine nucleotide exchange family protein (.1) AT3G60860 277 / 2e-75 SEC7-like guanine nucleotide exchange family protein (.1) AT4G38200 269 / 7e-73 SEC7-like guanine nucleotide exchange family protein (.1) AT4G35380 258 / 3e-69 SEC7-like guanine nucleotide exchange family protein (.1) AT3G43300 214 / 7e-56 BEN1, ATMIN7 BFA-VISUALIZED ENDOCYTIC TRAFFICKING DEFECTIVE1, HOPM interactor 7 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026627 [exp] 2892 / 0 AT1G13980 2395 / 0.0 VASCULAR NETWORK 7, GNOM, EMBRYO DEFECTIVE 30, sec7 domain-containing protein (.1.2) Lus10036789 [exp] 2357 / 0 AT1G13980 2300 / 0.0 VASCULAR NETWORK 7, GNOM, EMBRYO DEFECTIVE 30, sec7 domain-containing protein (.1.2) Lus10037140 [exp] 2354 / 0 AT1G13980 2274 / 0.0 VASCULAR NETWORK 7, GNOM, EMBRYO DEFECTIVE 30, sec7 domain-containing protein (.1.2) Lus10021771 [exp] 945 / 0 AT5G19610 1727 / 0.0 GNOM-like 2 (.1) Lus10034615 [exp] 890 / 0 AT5G19610 1647 / 0.0 GNOM-like 2 (.1) Lus10009300 [exp] 324 / 4e-90 AT3G60860 2741 / 0.0 SEC7-like guanine nucleotide exchange family protein (.1) Lus10015863 [exp] 280 / 4e-76 AT4G38200 1880 / 0.0 SEC7-like guanine nucleotide exchange family protein (.1) Lus10022983 [exp] 255 / 2e-68 AT4G38200 2320 / 0.0 SEC7-like guanine nucleotide exchange family protein (.1) Lus10009803 [exp] 249 / 2e-66 AT3G43300 2569 / 0.0 BFA-VISUALIZED ENDOCYTIC TRAFFICKING DEFECTIVE1, HOPM interactor 7 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G078900 [exp] 2454 / 0 AT1G13980 2416 / 0.0 VASCULAR NETWORK 7, GNOM, EMBRYO DEFECTIVE 30, sec7 domain-containing protein (.1.2) Potri.017G078800 [exp] 2236 / 0 AT1G13980 2180 / 0.0 VASCULAR NETWORK 7, GNOM, EMBRYO DEFECTIVE 30, sec7 domain-containing protein (.1.2) Potri.018G075300 [exp] 1042 / 0 AT5G19610 1796 / 0.0 GNOM-like 2 (.1) Potri.014G070600 [exp] 323 / 7e-90 AT3G60860 2664 / 0.0 SEC7-like guanine nucleotide exchange family protein (.1) Potri.002G149200 [exp] 315 / 2e-87 AT3G60860 2689 / 0.0 SEC7-like guanine nucleotide exchange family protein (.1) Potri.004G208400 [exp] 265 / 2e-71 AT4G38200 2354 / 0.0 SEC7-like guanine nucleotide exchange family protein (.1) Potri.009G169800 [exp] 253 / 6e-68 AT4G38200 2335 / 0.0 SEC7-like guanine nucleotide exchange family protein (.1) Potri.006G216900 [exp] 208 / 7e-54 AT3G43300 2728 / 0.0 BFA-VISUALIZED ENDOCYTIC TRAFFICKING DEFECTIVE1, HOPM interactor 7 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01369 [flax] [poplar] Sec7 Sec7 domain
Representative CDS sequence Show only first row Show all	>Lus10030432 pacid=23140593 polypeptide=Lus10030432 locus=Lus10030432.g ID=Lus10030432.BGIv1.0 annot-version=v1.0 ATGGGGCGTTTGAAGATGCAGCCTGGGATAAATTCAATTGAGGAAGAGCCTGAAGACTTGGAAGCAGCCTATGCTAACAAAACTACTTTAGCATGCATGA TCAATGCAGAAGTAGGTTCTGTTCTAGCTGTCATGAGGAGGAATGTAAGATGGGGCGGTCGATATATGTCGGGGGATGATCAACTAGATCATTCTTTCAT ACAGTCTCTGAAGGCATTGAGGAAGCCGATATTCACATGGCAGCATCCGTGGAATACCATCAATCCAGCGGTGTATCTGCAACCATTTTTGGAAGTGATT CGGTCTGATGAAATTGGCGCACCCATTACTGGGGTTGCTTTGTCATCTGTTTACAAGATCCTTACGCTGGATGTGATCGATAAGAATACTGCAAATGTTG AAGAGGCTATGCACTTGGTTGTTGATGCGGTGACTTCTTGCCGATTTGAGCCGACAGATCCGGCGTCAGAGGAAGTTGTACTGATGAAATTTCTTCAGGT TCTGCTAGCTTGCATGAAAAGTAAAGCGTCAGTTATGTTGAGCAATCAACATGTTTGTATGATTGTGAATACTTGTTTCCGCATAGTTCATCAATCAGGA AACAAGGGCGAGCTGTTGCAGCGGATGGCTCGCCACACAATGCACGAGCTTATTAGATGCATTTTTGCCCATCTTCCTGATGTGGATATTACTGAACACC CATTGGTAAATGGGGTGAGCACTTCCAAACCTGAGGTTGGTGGTCCGGATAACAATCATGCATTGGCAAGCAAACAGACTGAAAATGGCCAGTCAACCTC CGTGAGCTTATTATCTGATTCGACTGCTATTGTGGCAAGTCCAATGGAAGAGAGCTCAATAGGCGGTGGCAGTGGAACTGATGCATTTTCTTATGATATG CACCTTATGACTGAGCCATATGGGGTCCCTTGCATGGTGGAAGTATTTCATTTCTTGTGTTCTTTATTAAATGCTGCTGAGCATATGGGAACGGGTCCTA GATCGAACACTATAGCATATGAGGAGGATGTCCCCCTTTTTGCCTTGGGCCTAATTAATTCAGCTATAGAATTGGCCGGACCTTCTTTATGCCATCACCC TAGGTTGCTGACTTTAATTCACGATGAACTCTTCCGGAATCTGATGCAGTTTGGCTTGTCAATGAGCCCCCTTATTCTCTCAATGGTGTGCAGTATAGTA CTGAGCCTGTACCACCATTTGCGTTCTGAAATCAAATTACAACTCGAGGCTTTCTTCTCTTGTGTGATATTGAGATTGGCACAGAGCAAATTTGGTTCTT CATATCAGCAGCAGGAGGTTGCCATGGAGGCTCTAGTAGATTTCTGCAGACAGAAGACCTTCATGGTGGAGATGTATGCTAACTTGGATTGTGACATAAC ATGCAGCAATGTTTTTGAAGAACTTGCTAATTTGTTGTCAAAAAGTGCATTCCCTGTTAATTCTCCTCTGTCTGCAATGCACATTCTTGCATTAGATGGT CTGATTGCTGTAATTCAAGGGATGGCTGAGAGGATAGGGAACGAATCTGAAAACCCCGAGCAGACTCCGGTTGTCCTTGAGGAGTATACACCATTCTGGA TGGTGAAATGTGACAGCTACAGTGATCCTGATCATTGGGTTCCTTTTGTCCGCAGGAGAAAGTACATTAAGAGAAGGTTGATGATTGGAGCTGACCATTT CAACCGCGATCCCAAGAAGGGGCTAGAATTTCTCCAAGGAACACATCTCTTACCTGAAAAGCTTGACCCACAAAGTGTGGCTTGCTTTTTCAGATACACT GCTGGTCTGGATAAAAACCTTGTTGGGGACTTCCTTGGAAATCACGACGAGTTTTGTGTTCAGGTTCTTCACGAGTTCGCATGGACTTTCGATTTTCAGG ATATGAATCTGGATACAGCTCTCAGACTATTCTTAGAAACTTTCCGGCTTCCAGGTGAATCACAGAAAATCCAGAGGGTGCTTGAGGCATTCTCGGAGAG ATACTATGAACAATCACCGCAAGTTTTGGCTAACAAGGACGCTGCTCTTTTGTTATCTTACTCAATTATAATGCTCAACACAGATCAGCACAATGTACAG GTGAAGAAAAAGATGACCGAAGAGGATTTTATCCGGAACAATAGGCATATTAACGGAGGCCAGGATTTGCCTCGTGAATTCCTCGGCGAACTTTATCACT CAATTTGCAAGAATGAGATCCGTACAACCCCTGAACAAGGTGCTGGCTTTGCTGAAATGAACCCAAGCCGCTGGATCGACCTGATGCACAAGTCCAAAAA GACTCCCCCTTATATTGTTTCTGATTCTAGAGCCCATCTTGACCGTGACATGTTTGCTATAATGTCCGGTCCAACAATTGCTGCCATCTCTGTTGTGTTT GATCATACAGATCAGGAAGAGGTTTACCAGGCATGTATCGACGGTTTTCTAGCTATTGCTAGGATTTCAGCTTGCCATCATCTAGAAGACGTATTAGATG ATCTAGTTGTGTCTCTCTGCAAGTTCACTTCTTTATTGAATCCCTCGTTTATCGAGGAACCTGTGCTAGCCTTTGGTGATGATGCAAAGGCTAGGATGGC AACCGTAACAGTTTTCACCATCGCCCCCATCGCCAACCGGTACGGTGACTATATTCGCACTGGATGGAGGAATATCCTCGACTGCATTTTACGATTACAC AAACTCGGTCTCTTACCTGCCCGTGTGGCTAGTGACACAGCTGATGAATCAGAAACCTCTGCTGAACCGGGTCATGGAAAGCCGCCCATTTCGAGTTCTA TGTCTTCCGTCCAGATGCAGTCGGCCGGAACTCCCAGGCAATCGTCTGGATTAATGGGTAGGTTCAGTCAACTCTTGTCTCTTGACTCTGAGGAGCCGAG ATCTCAACCGACCGAGCAACAACTTGCTGCTCATCAACGTACAGTTCAAACTATTCAGACGTGCCACGTAGATAGTATATTCACAGAGAGTAAGTTCTTG CAAGCCGACTCTTTACTGCAGCTTGCAAAAGCATTGATCTGGGCAGCTGGTAGGCCGCAGAAAGGAAACAACTCCCCTGAAGACGAAGATACAGCAGTGT TCTGCCTCGAGTTACTCATTGCTATTACTTTGAACAACCGAGACCGAATCGGTCTCCTTTGGCAAGGCGTCTATGAGCACATAGCCAACATTGTCCAGTC AACTGTGATGCCGTGTGCTTTAGTAGAGAAGGCTGTTTTCGGCCTTCTCCGAATATGCCAGCGGCTGCTCCCTTACAAAGAAAACCTCGCCGATGAACTC TTGAGGTCGCTCAATCTAGTCTTGAAGCTCGATGCCCGGGTTGCTGATGCTTACTGTGACCAAATCACTCAGGAAGTCAGCCGCCTGGTGAAGGCTAACG CTACTCATATCAGATCTCAAATGGGGTGGCGGACTATCACATCTTTGCTTTCAATCACAGCTCGACATCCAGAAGCTTCCGAAGCAGGATTCGACGCTCT GTTATTCATCATGACCGGTAGCGCTCACCTCCTGCCGGCTAACTACATCCTATGCGTCGATGCTGCACGACAGTTCTCCGAGTCTCGAGTTGGACAATCT GAACGGTCTGTACGTGCTCTCGATCTCATGGAAAGTTCCGTGGATATCTTAACTCAGTGGTCTAAAGAAGCCGAAAATCCGATGCGAGATAACATTGGGG AGATGTGGTTGAGACTGGTACAAGGGCTGAGAAAAGTGTGTCTGGATCAAAGAGAAGAAGTCCGAAACCACGCTCTCCTCTCGCTGCAGAAATGTCTAAC CGGAGTCGAAGAGATCAACCTCCCGCACGGTCTATGGCTACAGTGCTTCGACATGGTTATCTTCACAATGCTGGACGACTTGCTCGAGATCGCTCAGGGA CACTCGCAGAAGGACTACCGAAACATGGAGGGAACTCTTATCGTCGCGTTGAAGCTTCTCTCGAAAGTGTTCCTGCAGCTTTTAGACGAGCTCGCAGAAC TCACGACCTTCTGCAAGCTGTGGCTGGGAGTCCTCACCCGGATGGAGAAGTACATGAAGGTGAAGATACGGTCGAGGAAGAGCGATAAGCTTCAGGAATC CGTGCCGGAACTTCTCAAGAACATCTTGCTGGTAATGAAAAGTAAAGGTGTTTTAGTCCAGAGGGCTGCCTTAGGTGGGGACAGCTTGTGGGAGCTGACG TGGCTACACATGAACAATATTGCTCCGTCGTTGCAGTCAGAGGTGTTTGCAGGTCACGAACTGGAGCAGTCTCGGCAGGTTAAATCCGGTCCGGACAGAA CTAGCGATAGTCCCGCTGTAGGATCCGAGTCTGCTGGTACTGGTGGATGA
AA sequence Show only first row Show all	>Lus10030432 pacid=23140593 polypeptide=Lus10030432 locus=Lus10030432.g ID=Lus10030432.BGIv1.0 annot-version=v1.0 MGRLKMQPGINSIEEEPEDLEAAYANKTTLACMINAEVGSVLAVMRRNVRWGGRYMSGDDQLDHSFIQSLKALRKPIFTWQHPWNTINPAVYLQPFLEVI RSDEIGAPITGVALSSVYKILTLDVIDKNTANVEEAMHLVVDAVTSCRFEPTDPASEEVVLMKFLQVLLACMKSKASVMLSNQHVCMIVNTCFRIVHQSG NKGELLQRMARHTMHELIRCIFAHLPDVDITEHPLVNGVSTSKPEVGGPDNNHALASKQTENGQSTSVSLLSDSTAIVASPMEESSIGGGSGTDAFSYDM HLMTEPYGVPCMVEVFHFLCSLLNAAEHMGTGPRSNTIAYEEDVPLFALGLINSAIELAGPSLCHHPRLLTLIHDELFRNLMQFGLSMSPLILSMVCSIV LSLYHHLRSEIKLQLEAFFSCVILRLAQSKFGSSYQQQEVAMEALVDFCRQKTFMVEMYANLDCDITCSNVFEELANLLSKSAFPVNSPLSAMHILALDG LIAVIQGMAERIGNESENPEQTPVVLEEYTPFWMVKCDSYSDPDHWVPFVRRRKYIKRRLMIGADHFNRDPKKGLEFLQGTHLLPEKLDPQSVACFFRYT AGLDKNLVGDFLGNHDEFCVQVLHEFAWTFDFQDMNLDTALRLFLETFRLPGESQKIQRVLEAFSERYYEQSPQVLANKDAALLLSYSIIMLNTDQHNVQ VKKKMTEEDFIRNNRHINGGQDLPREFLGELYHSICKNEIRTTPEQGAGFAEMNPSRWIDLMHKSKKTPPYIVSDSRAHLDRDMFAIMSGPTIAAISVVF DHTDQEEVYQACIDGFLAIARISACHHLEDVLDDLVVSLCKFTSLLNPSFIEEPVLAFGDDAKARMATVTVFTIAPIANRYGDYIRTGWRNILDCILRLH KLGLLPARVASDTADESETSAEPGHGKPPISSSMSSVQMQSAGTPRQSSGLMGRFSQLLSLDSEEPRSQPTEQQLAAHQRTVQTIQTCHVDSIFTESKFL QADSLLQLAKALIWAAGRPQKGNNSPEDEDTAVFCLELLIAITLNNRDRIGLLWQGVYEHIANIVQSTVMPCALVEKAVFGLLRICQRLLPYKENLADEL LRSLNLVLKLDARVADAYCDQITQEVSRLVKANATHIRSQMGWRTITSLLSITARHPEASEAGFDALLFIMTGSAHLLPANYILCVDAARQFSESRVGQS ERSVRALDLMESSVDILTQWSKEAENPMRDNIGEMWLRLVQGLRKVCLDQREEVRNHALLSLQKCLTGVEEINLPHGLWLQCFDMVIFTMLDDLLEIAQG HSQKDYRNMEGTLIVALKLLSKVFLQLLDELAELTTFCKLWLGVLTRMEKYMKVKIRSRKSDKLQESVPELLKNILLVMKSKGVLVQRAALGGDSLWELT WLHMNNIAPSLQSEVFAGHELEQSRQVKSGPDRTSDSPAVGSESAGTGG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G13980		VAN7, EMB30, GN	VASCULAR NETWORK 7, GNOM, EMBR...		Lus10030432 [exp]	0	1
AT5G53150			DNAJ heat shock N-terminal dom...		Lus10038816 [exp]	2.8	0.8851
AT3G60240		CUM2, EIF4G	CUCUMOVIRUS MULTIPLICATION 2, ...		Lus10042856 [exp]	3.2	0.9139
AT5G19130			GPI transamidase component fam...		Lus10032125 [exp]	4.2	0.8900
AT5G53060			RNA-binding KH domain-containi...		Lus10005915 [exp]	4.8	0.8575
AT3G60240		CUM2, EIF4G	CUCUMOVIRUS MULTIPLICATION 2, ...		Lus10028156 [exp]	6.0	0.8997
AT3G26560			ATP-dependent RNA helicase, pu...		Lus10037145 [exp]	8.4	0.8787
AT3G16060			ATP binding microtubule motor ...		Lus10037546 [exp]	8.5	0.8781
AT4G09160			SEC14 cytosolic factor family ...		Lus10009458 [exp]	9.5	0.8722
AT5G02310		PRT6, CER3	proteolysis 6 (.1)		Lus10024393 [exp]	11.2	0.8765
AT5G44370		PHT4;6	phosphate transporter 4;6 (.1)		Lus10026551 [exp]	11.5	0.8692

Compare expression of checked genes

Lus10030432 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.