Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G46520 213 / 3e-62 cellular apoptosis susceptibility protein, putative / importin-alpha re-exporter, putative (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030423 [exp] 390 / 5e-134 AT2G46520 398 / 6e-129 cellular apoptosis susceptibility protein, putative / importin-alpha re-exporter, putative (.1) Lus10026635 [exp] 308 / 7e-100 AT2G46520 363 / 3e-113 cellular apoptosis susceptibility protein, putative / importin-alpha re-exporter, putative (.1) Lus10005968 [exp] 266 / 3e-83 AT2G46520 1073 / 0.0 cellular apoptosis susceptibility protein, putative / importin-alpha re-exporter, putative (.1) Lus10030241 [exp] 263 / 2e-80 AT2G46520 1438 / 0.0 cellular apoptosis susceptibility protein, putative / importin-alpha re-exporter, putative (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G100000 [exp] 222 / 2e-65 AT2G46520 1464 / 0.0 cellular apoptosis susceptibility protein, putative / importin-alpha re-exporter, putative (.1) Potri.002G172700 [exp] 216 / 3e-63 AT2G46520 1421 / 0.0 cellular apoptosis susceptibility protein, putative / importin-alpha re-exporter, putative (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF08506 [flax] [poplar] Cse1 Cse1 CL0020 [flax] [poplar] TPR PF03378 [flax] [poplar] CAS_CSE1 CAS/CSE protein, C-terminus
Representative CDS sequence Show only first row Show all	>Lus10030433 pacid=23140688 polypeptide=Lus10030433 locus=Lus10030433.g ID=Lus10030433.BGIv1.0 annot-version=v1.0 ATGCTCAAAGCTGGTGCTCTAAGGTTCTGCACACTGTTGAGAAATCAGATACCGAAGCAGCATCTTGCTGCAATTCAACATCATCTTCCTCGGTTCCTCG TAGCAGAGTCAAACGTAGTACATTCTTATGCTGCCAGGTGTATAGAGAAAGTTGTGCTAGTTAAGAATGATGCTGCTGCTGGGGCATCATCAGATTTGGC TCCGGGGCTGATGAACAACCTATTTAATGCATTGAAATTACCAGAATCTGAGGAGAATCAGTACATCATCAAGTGCATCATGCGGGTAATAGGGGTAGCA GAAACAAACCGTGGTGATATGGCTCCCTACATGGTTCACATCTGGGCTTCCATATTCAGCTGTGTCATGGAGGAAGACGAAGCAGGGTTATCGCAATTGC TCGTAAATAAGTCTCTTGTGATTTTCATGTCACGGTATCTGATCAAGCATGGTCCTGGAAACCTCATTGATTCAATGAATACTTCAGGTCAAGGGAACAT CTTCATGACGATCCTGGAAAAATGTTGGATACCGGGTCTCAGGATTTTGGGGCGAGAGATTGAGGTTAAGTTAGCTGCTGTTGCATCATGCAGACTTATC TGCGAATCTCCTCTTCTTTTGGATCCAGCAGCTGCTAGTCACTGGGGGGAAATGCTGGACAGCATTGTCACTATACTGTCAAGAAAGCCAGATGAAGTTA AGGTTCCGTTCAAAAAGAGACTGCTGCTTGACATGGAGCCTGAATTTATGGACGGCGCATATACTAAACGGTTCGTCCCTCTTTACAATGTTTGGAAGGA GGAAGATGACCCGTTGAAAGACGTTAGAGATCCAAAGCAGTTCCTAGTGAGTTGTTTGTCAAGGCTCACTGCATATTATCCTGGGAGGTTCCAACAAATA ATCAATCAGAATCTCCATCCAAAGAATCAAACAGCACTGCTCCAGCTTTGCAACACTTATAATTCTCCCATTCAATTTTCTTCCTCCTAA
AA sequence Show only first row Show all	>Lus10030433 pacid=23140688 polypeptide=Lus10030433 locus=Lus10030433.g ID=Lus10030433.BGIv1.0 annot-version=v1.0 MLKAGALRFCTLLRNQIPKQHLAAIQHHLPRFLVAESNVVHSYAARCIEKVVLVKNDAAAGASSDLAPGLMNNLFNALKLPESEENQYIIKCIMRVIGVA ETNRGDMAPYMVHIWASIFSCVMEEDEAGLSQLLVNKSLVIFMSRYLIKHGPGNLIDSMNTSGQGNIFMTILEKCWIPGLRILGREIEVKLAAVASCRLI CESPLLLDPAAASHWGEMLDSIVTILSRKPDEVKVPFKKRLLLDMEPEFMDGAYTKRFVPLYNVWKEEDDPLKDVRDPKQFLVSCLSRLTAYYPGRFQQI INQNLHPKNQTALLQLCNTYNSPIQFSSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G46520			cellular apoptosis susceptibil...		Lus10030433 [exp]	0	1
AT1G68670	GARP		myb-like transcription factor ...		Lus10035043 [exp]	12.1	0.7405
AT3G05670			RING/U-box protein (.1)		Lus10031468 [exp]	16.0	0.7119
					Lus10036528 [exp]	16.4	0.7072
AT4G19550			zinc ion binding;transcription...		Lus10006630 [exp]	17.7	0.7115
AT1G25550	GARP		myb-like transcription factor ...		Lus10021699 [exp]	22.8	0.7119
AT3G52155			Phosphoglycerate mutase family...		Lus10040405 [exp]	22.8	0.6935
AT5G20150		ATSPX1	ARABIDOPSIS THALIANA SPX DOMA...		Lus10043272 [exp]	36.4	0.6983
AT1G09790		COBL6	COBRA-like protein 6 precursor...		Lus10016188 [exp]	40.9	0.6504
AT3G47420		AtG3Pp1, ATPS3	Glycerol-3-phosphate permease ...		Lus10031153 [exp]	41.7	0.6966
AT5G20150		ATSPX1	ARABIDOPSIS THALIANA SPX DOMA...		Lus10019415 [exp]	48.1	0.6909

Compare expression of checked genes

Lus10030433 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.